View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1520_low_29 (Length: 228)

Name: NF1520_low_29
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1520_low_29
NF1520_low_29
[»] chr7 (6 HSPs)
chr7 (190-228)||(42344224-42344262)
chr7 (190-226)||(30916508-30916544)
chr7 (190-228)||(34852557-34852595)
chr7 (190-228)||(34853344-34853382)
chr7 (190-224)||(42343296-42343330)
chr7 (190-228)||(46814257-46814295)
[»] chr2 (6 HSPs)
chr2 (190-228)||(6852819-6852857)
chr2 (190-226)||(6851912-6851948)
chr2 (189-224)||(26487859-26487894)
chr2 (190-228)||(26893482-26893520)
chr2 (190-228)||(26898921-26898959)
chr2 (190-224)||(8536900-8536934)
[»] chr1 (6 HSPs)
chr1 (190-228)||(38618230-38618268)
chr1 (190-228)||(50355006-50355044)
chr1 (189-228)||(24976729-24976768)
chr1 (190-228)||(51976264-51976302)
chr1 (189-228)||(29334957-29334996)
chr1 (190-228)||(51610231-51610269)
[»] chr5 (4 HSPs)
chr5 (190-227)||(43589173-43589210)
chr5 (192-228)||(18153444-18153480)
chr5 (189-228)||(7495267-7495306)
chr5 (190-228)||(42993210-42993248)
[»] chr4 (6 HSPs)
chr4 (190-227)||(20681722-20681759)
chr4 (190-228)||(23574627-23574665)
chr4 (190-228)||(53665096-53665134)
chr4 (189-228)||(55511901-55511940)
chr4 (190-228)||(53664212-53664250)
chr4 (190-227)||(23573638-23573675)
[»] chr8 (5 HSPs)
chr8 (190-228)||(33801499-33801537)
chr8 (190-228)||(33802383-33802421)
chr8 (190-228)||(42638148-42638186)
chr8 (190-228)||(38686303-38686341)
chr8 (195-227)||(38687066-38687098)
[»] chr3 (3 HSPs)
chr3 (190-228)||(35432231-35432269)
chr3 (190-228)||(44406197-44406235)
chr3 (193-228)||(35431335-35431370)
[»] chr6 (3 HSPs)
chr6 (190-228)||(20687464-20687502)
chr6 (190-224)||(20689070-20689104)
chr6 (192-228)||(10606336-10606372)


Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 42344262 - 42344224
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42344262 ggtggcatttagggtgggtaggaggaattctttcccacc 42344224  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 30916544 - 30916508
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttccca 226  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30916544 ggtggcatttagggtgggtaggaagaattctttccca 30916508  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 34852557 - 34852595
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  34852557 ggtggcatttagggtgggtagaaggaattcttttccacc 34852595  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 34853382 - 34853344
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  34853382 ggtggcatttagggtgggtaggaggaagactttcccacc 34853344  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 42343296 - 42343330
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcc 224  Q
    |||||||||||||||||||||||||||| ||||||    
T  42343296 ggtggcatttagggtgggtaggaggaatactttcc 42343330  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 46814295 - 46814257
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  46814295 ggtggtatttaggatgggtaggaggaattctttcccacc 46814257  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 6852857 - 6852819
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6852857 ggtggcatttagggtgggtaggaggaattctttcccacc 6852819  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 6851912 - 6851948
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttccca 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  6851912 ggtggcatttagggtgggtaggaggaattctttccca 6851948  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 26487894 - 26487859
Alignment:
Q  189 tggtggcatttagggtgggtaggaggaattctttcc 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  26487894 tggtggcatttagggtgggtaggaggaattctttcc 26487859  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 26893482 - 26893520
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26893482 ggtggcatttagggtgggtagaaggaattctttcccacc 26893520  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 26898921 - 26898959
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26898921 ggtggcatttagggtgggtagaaggaattctttcccacc 26898959  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 8536934 - 8536900
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcc 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  8536934 ggtggcatttagggtgggtagaaggaattctttcc 8536900  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 38618230 - 38618268
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38618230 ggtggcatttagggtgggtaggaggaattctttcccacc 38618268  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 50355044 - 50355006
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50355044 ggtggcatttagggtgggtaggaggaattctttcccacc 50355006  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 24976768 - 24976729
Alignment:
Q  189 tggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  24976768 tggtggcatttagggtgggtaggaggaattcttttccacc 24976729  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 51976264 - 51976302
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  51976264 ggtggcatttagggtgggtaggaggaattcttttccacc 51976302  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 29334996 - 29334957
Alignment:
Q  189 tggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  29334996 tggtgtcatttagggtgggtaggaggaattatttcccacc 29334957  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 51610269 - 51610231
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccacc 51610231  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 43589210 - 43589173
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccac 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43589210 ggtggcatttagggtgggtaggaggaattctttcccac 43589173  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 18153480 - 18153444
Alignment:
Q  192 tggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18153480 tggcatttagggtgggtaggaggaattcttttccacc 18153444  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 7495306 - 7495267
Alignment:
Q  189 tggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  7495306 tggtgacatttagggtgggtagggggaattctttcccacc 7495267  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 42993248 - 42993210
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  42993248 ggtggcatttagggtgggtagaaggaattctatcccacc 42993210  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 20681722 - 20681759
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccac 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20681722 ggtggcatttagggtgggtaggaggaattctttcccac 20681759  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 23574665 - 23574627
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23574665 ggtggcatttagggtggataggaggaattctttcccacc 23574627  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 53665134 - 53665096
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  53665134 ggtggcatttagggtgggtagaaggaattctttcccacc 53665096  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 55511901 - 55511940
Alignment:
Q  189 tggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  55511901 tggtggcatttagggtaggtaggaggaatactttcccacc 55511940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 53664212 - 53664250
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  53664212 ggtggtatttagggtgggtagaaggaattctttcccacc 53664250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 23573638 - 23573675
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccac 227  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  23573638 ggtggcatttaggttgggtcggaggaattctttcccac 23573675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 33801499 - 33801537
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  33801499 ggtggcatttagggtgggtagaaggaattctttcccacc 33801537  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 33802421 - 33802383
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  33802421 ggtggcatttagggtgggtagaaggaattctttcccacc 33802383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 42638148 - 42638186
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  42638148 ggtggcatttagggtgggtaggaggaattcttttccacc 42638186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 38686303 - 38686341
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  38686303 ggtggcatttagggtgggtagaaggaattcttttccacc 38686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 38687098 - 38687066
Alignment:
Q  195 catttagggtgggtaggaggaattctttcccac 227  Q
    |||||||||||||||| ||||||||||||||||    
T  38687098 catttagggtgggtagaaggaattctttcccac 38687066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 35432269 - 35432231
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  35432269 ggtggcatttagggtgggtagaaggaattctttcccacc 35432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 44406197 - 44406235
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  44406197 ggtggcatttagggtgggtaggaagaattctttcccacc 44406235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 35431335 - 35431370
Alignment:
Q  193 ggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35431335 ggcatttagggtgggtaggaggaatactttcccacc 35431370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20687464 - 20687502
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcccacc 228  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  20687464 ggtggcatttagggtaggtaggaggaatactttcccacc 20687502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 20689104 - 20689070
Alignment:
Q  190 ggtggcatttagggtgggtaggaggaattctttcc 224  Q
    |||||||||||||||||||||||||||| ||||||    
T  20689104 ggtggcatttagggtgggtaggaggaatactttcc 20689070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 10606336 - 10606372
Alignment:
Q  192 tggcatttagggtgggtaggaggaattctttcccacc 228  Q
    |||||| |||||||||||||||||||||||| |||||    
T  10606336 tggcatgtagggtgggtaggaggaattcttttccacc 10606372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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