View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_34 (Length: 204)
Name: NF1520_low_34
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_34 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 86773 - 86621
Alignment:
| Q |
18 |
atataagagtgttggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttata--gttggtgttgctatcacttttctaatgaatttatta |
115 |
Q |
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| T |
86773 |
atataagagtgt-ggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttatatagttggtgttgctatcacttttctaatgaatttatta |
86675 |
T |
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| Q |
116 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcct |
169 |
Q |
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| T |
86674 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcct |
86621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 1e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 40879510 - 40879662
Alignment:
| Q |
18 |
atataagagtgttggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttata--gttggtgttgctatcacttttctaatgaatttatta |
115 |
Q |
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| T |
40879510 |
atataagagtgt-ggaatgagaaattatttgaaaaagtgaacgtaaaaaacatagtgttatatagttggtgttgctatcacttttctaatgaatttatta |
40879608 |
T |
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| Q |
116 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcct |
169 |
Q |
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| T |
40879609 |
cctaaaaaccatacatgatcataacaaaactaaaaacccccaacaataattcct |
40879662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 40879663 - 40879693
Alignment:
| Q |
161 |
ataattcctcaccaacgtgatttcacaggtt |
191 |
Q |
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| T |
40879663 |
ataattcctcaccaacgtgatttcacaggtt |
40879693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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