View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1520_low_4 (Length: 448)
Name: NF1520_low_4
Description: NF1520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1520_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 433
Target Start/End: Complemental strand, 3408817 - 3408381
Alignment:
| Q |
12 |
agagatcataagcattgttctccgaattttggggcatg-----ctcaataatcaatgcagtatcaacaaaattcttttatgggaccccaaccctacct-- |
104 |
Q |
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| T |
3408817 |
agagaccataagcattgttctccgaattttggggcatggatttctcaataatcaatgcagtatcaacaaaattcttttatgcgaccccaaccctacctac |
3408718 |
T |
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| Q |
105 |
--gattgagcttcctttgcagattgtactgctgccgtaccaccttgatattcatcataccttctcctat-----cctagaaactcactactactttccat |
197 |
Q |
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| T |
3408717 |
ctgattgaccttcttttgcagactgtactgctgccgtaccaccttgatattcatcataccttctcctatgatatcctagaaactcactactactttccat |
3408618 |
T |
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| Q |
198 |
cttgtggccataatatctacattggaaacaaatttgatggatgttttcatattccaatagaaacttttagcctctaatgacaatatatgccactagtggt |
297 |
Q |
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| T |
3408617 |
cttgtggccataatatctacaatggaaacaaatttgatggatgtcttcatattccaatagaaacttttagcctctaatgacaatatatgccactagtggt |
3408518 |
T |
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| Q |
298 |
ttttctagaccgatttcaatacaaatctgtgtgaattgtcatcgtgagt----ggattgatgtaagaaaatcaacctta---agcatcatctcgagagag |
390 |
Q |
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| T |
3408517 |
ttttctagaccgatttcaatacaaatctgtgtgaattgtcatcgtgagtggatggattgatgtaagaaaatcaaccttaattagcatcatctc------g |
3408424 |
T |
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| Q |
391 |
agggttgttctaatacgagtaaggaattctatgctataaagat |
433 |
Q |
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| T |
3408423 |
agggttattctaatacgagtaaggaattctatgctataaagat |
3408381 |
T |
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