View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15210_high_3 (Length: 339)
Name: NF15210_high_3
Description: NF15210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15210_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 37444033 - 37444331
Alignment:
| Q |
11 |
aatgagataagcgctttttagtgttcaaatacacacatattgatacattttctacttatttcagtaagctttccaaaaatagcttataattttggttcaa |
110 |
Q |
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| T |
37444033 |
aatgagataagcgctttttagtgttcaaatacacacatattgata------------------gtaagctttccaaaaatagcttataattttggttcaa |
37444114 |
T |
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| Q |
111 |
aattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagt |
210 |
Q |
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| T |
37444115 |
aattggtttcactcactctaccctctcttttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagt |
37444214 |
T |
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| Q |
211 |
aatttgtcaaaccctcgctgctaatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagc |
310 |
Q |
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| T |
37444215 |
aatttgtcaaaccctcactgctaatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagc |
37444314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 7492676 - 7492522
Alignment:
| Q |
45 |
acatattgatacattttctacttatttcagtaagctttccaaaaa-----tagcttataattttggttcaaaattggtttcactcactctaccctctctt |
139 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||||| || || |||||||| |
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| T |
7492676 |
acatattgataatttttctacttaattcaataagctttccaaaatactactagcctataatttaggttcaaaattggtttcattc----tatcctctctt |
7492581 |
T |
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| Q |
140 |
ttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgt |
198 |
Q |
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| T |
7492580 |
ttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatgt |
7492522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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