View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15211_low_1 (Length: 453)
Name: NF15211_low_1
Description: NF15211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15211_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 34942418 - 34942853
Alignment:
| Q |
1 |
taaatacaaatcaaccccaaaagtacaaaacattatcttaatcttagctaacaagaaactattatccgcaatttccccttaaaaaataatgattccttgt |
100 |
Q |
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| T |
34942418 |
taaatacaaatcaaccccaaaagtacaaa-cattatcttaatcttagctaacaagaaactattatccgcaatttccccttaaaaaataatgattccttgt |
34942516 |
T |
|
| Q |
101 |
taaccaaatcatccaaatagtaattagtcaaattaaatgtttaactttccgtaacctttctccccttaagaatactggcatgctgaacaaagtgatttac |
200 |
Q |
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| T |
34942517 |
taaccaaatcatccaaatagtaattagtcaaattaaatgtttaactttccgtaacctttctccccttaagaatactgttatgctgaacaaagtgatttac |
34942616 |
T |
|
| Q |
201 |
ccattgttatgaaaatgtacctatatcatccacccataaacaagacacaacatattatcagggtcggcccaacaatacacaatatatttttcaaaacatt |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34942617 |
ccattgttatgaaaatttacctatatcatccacccataaacaagacacaacatattatcagggtcggcccaacaatacataatatatttttcaaaacatt |
34942716 |
T |
|
| Q |
301 |
tgtcagagctatctgacatgtgacatacgaatgtcgttcatgtatgtagacataaagacatatctaattttaaaggtgtactgtgtacatgcttcatagc |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
34942717 |
tgtcagagctatctgacatgtgacatacgaatatcgttcatatatgtagacataaagacatatctgattttaaaggtgtactgtgtacatgtttcatagc |
34942816 |
T |
|
| Q |
401 |
tatttttagatgaattcatatcacctctatagagaag |
437 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |
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| T |
34942817 |
tatttttagatggattcatatcacctctacagagaag |
34942853 |
T |
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