View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15211_low_2 (Length: 411)

Name: NF15211_low_2
Description: NF15211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15211_low_2
NF15211_low_2
[»] chr7 (18 HSPs)
chr7 (18-269)||(1807368-1807619)
chr7 (350-411)||(4974749-4974809)
chr7 (360-411)||(15329273-15329324)
chr7 (360-411)||(15577864-15577915)
chr7 (360-411)||(42611811-42611862)
chr7 (360-411)||(45637712-45637763)
chr7 (360-411)||(48880941-48880992)
chr7 (360-411)||(3961979-3962030)
chr7 (360-411)||(20010111-20010162)
chr7 (360-411)||(24394972-24395023)
chr7 (360-411)||(34482835-34482886)
chr7 (360-411)||(35444558-35444609)
chr7 (359-411)||(25167864-25167916)
chr7 (360-411)||(37477094-37477145)
chr7 (359-411)||(29737138-29737190)
chr7 (363-411)||(36790480-36790528)
chr7 (360-411)||(15238382-15238433)
chr7 (360-411)||(18036978-18037029)
[»] scaffold0178 (1 HSPs)
scaffold0178 (350-411)||(11611-11672)
[»] chr1 (19 HSPs)
chr1 (355-411)||(40214983-40215039)
chr1 (360-411)||(9910307-9910358)
chr1 (364-411)||(16045812-16045859)
chr1 (360-411)||(18404442-18404493)
chr1 (360-411)||(44094698-44094749)
chr1 (360-410)||(19015404-19015454)
chr1 (360-410)||(36966723-36966773)
chr1 (360-410)||(37821849-37821899)
chr1 (360-411)||(25463676-25463727)
chr1 (360-411)||(25973414-25973465)
chr1 (360-411)||(32000281-32000332)
chr1 (363-411)||(3559620-3559668)
chr1 (360-411)||(6883487-6883538)
chr1 (360-411)||(40273702-40273753)
chr1 (360-411)||(41876456-41876507)
chr1 (360-397)||(34519758-34519795)
chr1 (360-397)||(51620980-51621017)
chr1 (360-397)||(52329319-52329356)
chr1 (364-408)||(27523054-27523098)
[»] chr8 (30 HSPs)
chr8 (360-411)||(32064745-32064796)
chr8 (360-411)||(34665382-34665433)
chr8 (360-410)||(15187560-15187610)
chr8 (360-409)||(24211569-24211618)
chr8 (360-411)||(17841864-17841915)
chr8 (360-411)||(20091815-20091866)
chr8 (360-411)||(26042130-26042181)
chr8 (360-411)||(32393858-32393909)
chr8 (360-411)||(40780143-40780194)
chr8 (360-411)||(42755056-42755107)
chr8 (363-411)||(8453837-8453885)
chr8 (360-407)||(1645983-1646030)
chr8 (360-411)||(35353041-35353092)
chr8 (368-411)||(38016979-38017022)
chr8 (361-411)||(14128865-14128915)
chr8 (360-411)||(31347796-31347847)
chr8 (364-411)||(37986069-37986116)
chr8 (360-411)||(39772815-39772866)
chr8 (353-410)||(41819793-41819850)
chr8 (360-411)||(6108247-6108298)
chr8 (360-411)||(7017879-7017930)
chr8 (360-411)||(27835467-27835518)
chr8 (360-411)||(37132672-37132723)
chr8 (365-411)||(25581253-25581299)
chr8 (361-411)||(27782131-27782181)
chr8 (370-410)||(7021988-7022028)
chr8 (360-404)||(30055543-30055587)
chr8 (359-411)||(30835061-30835112)
chr8 (364-411)||(24844872-24844919)
chr8 (364-410)||(3890413-3890459)
[»] chr6 (16 HSPs)
chr6 (360-411)||(28675148-28675199)
chr6 (360-411)||(33695341-33695392)
chr6 (360-411)||(33696696-33696747)
chr6 (359-411)||(25986929-25986981)
chr6 (360-411)||(6127275-6127326)
chr6 (360-411)||(17176035-17176086)
chr6 (360-411)||(17705479-17705530)
chr6 (360-411)||(18365587-18365638)
chr6 (360-411)||(18370851-18370902)
chr6 (360-411)||(23291098-23291149)
chr6 (360-411)||(18889711-18889761)
chr6 (360-411)||(6031755-6031806)
chr6 (366-411)||(11548602-11548647)
chr6 (358-410)||(32702205-32702255)
chr6 (363-395)||(8515755-8515787)
chr6 (360-393)||(2309455-2309488)
[»] chr5 (20 HSPs)
chr5 (360-411)||(6043525-6043576)
chr5 (360-411)||(2477636-2477687)
chr5 (360-411)||(3362778-3362829)
chr5 (360-411)||(11361145-11361196)
chr5 (360-411)||(38899740-38899791)
chr5 (360-408)||(14138668-14138716)
chr5 (360-411)||(4892202-4892253)
chr5 (364-411)||(8145379-8145426)
chr5 (360-411)||(12850801-12850852)
chr5 (360-411)||(22913068-22913119)
chr5 (360-411)||(25398238-25398289)
chr5 (360-411)||(33584343-33584394)
chr5 (360-410)||(4434022-4434072)
chr5 (359-411)||(37321807-37321860)
chr5 (360-411)||(3522020-3522071)
chr5 (360-411)||(12614747-12614798)
chr5 (360-411)||(17545699-17545750)
chr5 (364-411)||(27481830-27481877)
chr5 (372-411)||(10458409-10458448)
chr5 (360-397)||(13664642-13664679)
[»] chr4 (23 HSPs)
chr4 (360-411)||(10442803-10442854)
chr4 (360-411)||(22199261-22199312)
chr4 (360-411)||(31078833-31078884)
chr4 (360-411)||(36072947-36072998)
chr4 (360-411)||(49387902-49387953)
chr4 (360-410)||(2624837-2624887)
chr4 (360-411)||(4751446-4751497)
chr4 (360-411)||(21802336-21802387)
chr4 (360-411)||(24128239-24128290)
chr4 (360-411)||(33530702-33530753)
chr4 (360-411)||(47290066-47290117)
chr4 (361-411)||(7745126-7745176)
chr4 (360-411)||(24392667-24392718)
chr4 (364-411)||(36073354-36073401)
chr4 (360-411)||(44893426-44893477)
chr4 (360-411)||(46441844-46441895)
chr4 (360-411)||(53123030-53123082)
chr4 (360-411)||(23964479-23964530)
chr4 (360-411)||(37934955-37935006)
chr4 (360-411)||(50156592-50156643)
chr4 (355-411)||(44893227-44893284)
chr4 (364-411)||(25063373-25063420)
chr4 (366-411)||(42671675-42671720)
[»] chr3 (28 HSPs)
chr3 (360-411)||(6041884-6041935)
chr3 (360-411)||(2754717-2754768)
chr3 (360-411)||(3137428-3137479)
chr3 (360-411)||(3574541-3574592)
chr3 (360-411)||(11347268-11347319)
chr3 (360-411)||(37217067-37217118)
chr3 (360-411)||(42297353-42297404)
chr3 (360-410)||(3456064-3456114)
chr3 (360-410)||(34482925-34482975)
chr3 (360-410)||(48160905-48160955)
chr3 (357-410)||(8320599-8320652)
chr3 (360-408)||(33113793-33113841)
chr3 (360-411)||(30385011-30385062)
chr3 (359-411)||(19650914-19650966)
chr3 (360-411)||(37522053-37522104)
chr3 (361-411)||(9797043-9797093)
chr3 (360-404)||(24343547-24343591)
chr3 (359-411)||(41224232-41224284)
chr3 (371-411)||(42921154-42921194)
chr3 (360-411)||(22426358-22426409)
chr3 (360-411)||(33145713-33145763)
chr3 (360-411)||(36865041-36865092)
chr3 (363-397)||(40327878-40327912)
chr3 (364-411)||(40328051-40328098)
chr3 (360-391)||(47402630-47402661)
chr3 (369-411)||(33839755-33839797)
chr3 (372-410)||(47738117-47738155)
chr3 (360-408)||(33839531-33839579)
[»] chr2 (16 HSPs)
chr2 (360-410)||(21936081-21936131)
chr2 (360-411)||(7475522-7475573)
chr2 (360-411)||(9293590-9293641)
chr2 (360-411)||(23268076-23268127)
chr2 (360-411)||(35160757-35160808)
chr2 (361-411)||(10661888-10661938)
chr2 (360-410)||(13354846-13354896)
chr2 (359-411)||(33380206-33380258)
chr2 (354-411)||(14941380-14941437)
chr2 (363-411)||(31174848-31174896)
chr2 (360-411)||(43330912-43330963)
chr2 (358-411)||(9723403-9723456)
chr2 (362-411)||(21393702-21393751)
chr2 (364-411)||(22592932-22592979)
chr2 (360-411)||(27847632-27847683)
chr2 (363-397)||(40262714-40262748)
[»] scaffold0471 (1 HSPs)
scaffold0471 (360-411)||(12842-12893)
[»] scaffold0096 (1 HSPs)
scaffold0096 (360-411)||(41011-41062)
[»] scaffold0085 (1 HSPs)
scaffold0085 (360-411)||(47850-47901)
[»] scaffold0204 (1 HSPs)
scaffold0204 (360-411)||(4396-4447)
[»] scaffold0665 (1 HSPs)
scaffold0665 (361-411)||(3069-3119)
[»] scaffold0228 (3 HSPs)
scaffold0228 (371-411)||(8413-8453)
scaffold0228 (371-411)||(15995-16035)
scaffold0228 (371-411)||(25947-25987)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 1807368 - 1807619
Alignment:
Q  18 gcttcaatattcctgatcttatcagctaagtttccatgcatannnnnnnnnnnnnnnnngcttaaattcaattttgtcctaccaatttatacagattcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||| |||||||||||||||||||    
T  1807368 gcttcaatattcctgatcttatcagctaagtttccatgcatatttttttatttttttttgcttaaattcaattttgtccttccaatttatacagattcat 1807467  T
Q  118 aaatttagaccaccaactttaatatcccaaaaatgttgcttcccattttaaaatctttaaaaaatatctctagacactgaatttgaggcttatttttatt 217  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1807468 gaatttagaccaccaactttaatatcccaaaaacgttgcttcccattttaaaatctttaaaaaatatctctagacactgaatttgaggcttatttttgtt 1807567  T
Q  218 gatgtgtagctaaataatgagttggtcgatcgccagatgaagtgtcacataa 269  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  1807568 gatgtgtagctaaataatgtgttggtcgatcgctggatgaagtgtcacataa 1807619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 4974809 - 4974749
Alignment:
Q  350 aaataaaatggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974809 aaataaaatg-agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 4974749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 15329273 - 15329324
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329273 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15329324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 15577915 - 15577864
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577915 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 42611811 - 42611862
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 42611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 45637712 - 45637763
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45637712 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 45637763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 48880992 - 48880941
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 48880941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 3961979 - 3962030
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3962030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 20010162 - 20010111
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20010162 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 20010111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 24394972 - 24395023
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 24395023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 34482835 - 34482886
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  34482835 gagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgac 34482886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 35444558 - 35444609
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  35444558 gagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgac 35444609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 25167916 - 25167864
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  25167916 ggagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 25167864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 37477145 - 37477094
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  37477145 gagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgac 37477094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 29737138 - 29737190
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||| ||||||||||||||||||||||||| | |||||||||| |||||||||    
T  29737138 ggagtaatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 29737190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 36790528 - 36790480
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgac 36790480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 15238382 - 15238433
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  15238382 gagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 15238433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 18036978 - 18037029
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||||||||| ||||||||| || |||||||||    
T  18036978 gagcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgac 18037029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 11611 - 11672
Alignment:
Q  350 aaataaaatggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11611 aaatataattgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 40214983 - 40215039
Alignment:
Q  355 aaatggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40214983 aaattgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 40215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 9910358 - 9910307
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 9910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 16045859 - 16045812
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 16045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 18404442 - 18404493
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18404442 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 18404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 44094698 - 44094749
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 44094749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 19015404 - 19015454
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19015404 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 19015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 36966773 - 36966723
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 36966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 37821899 - 37821849
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 37821849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 25463676 - 25463727
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  25463676 gagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgac 25463727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 25973414 - 25973465
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25973414 gagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgac 25973465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 32000332 - 32000281
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  32000332 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 32000281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 3559620 - 3559668
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 3559668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 6883487 - 6883538
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6883487 gagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgac 6883538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 40273702 - 40273753
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  40273702 gagcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgac 40273753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 41876507 - 41876456
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  41876507 gagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgac 41876456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 34519758 - 34519795
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaa 397  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  34519758 gagcaatgctatatatcaagaaagattttattaagaaa 34519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 51620980 - 51621017
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaa 397  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  51620980 gagcaatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 52329319 - 52329356
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaa 397  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  52329319 gagcaatgttatatatcaagaaagaatttatcaagaaa 52329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 27523054 - 27523098
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaat 408  Q
    |||| ||||||||||||| |||||||||||||||  |||||||||    
T  27523054 aatgttatatatcaagaatgattttatcaagaaagattcaagaat 27523098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 32064745 - 32064796
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064745 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 32064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 34665382 - 34665433
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 34665433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 15187560 - 15187610
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15187560 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 15187610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 24211618 - 24211569
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 24211569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 17841915 - 17841864
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17841915 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 17841864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 20091866 - 20091815
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 20091815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 26042181 - 26042130
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26042181 gagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgac 26042130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 32393858 - 32393909
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 32393909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 40780194 - 40780143
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40780194 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 40780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 42755107 - 42755056
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42755107 gagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgac 42755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 8453837 - 8453885
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 8453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 1646030 - 1645983
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  1646030 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaa 1645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 35353041 - 35353092
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 35353092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 38016979 - 38017022
Alignment:
Q  368 ctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgac 38017022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 14128865 - 14128915
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 14128915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 31347847 - 31347796
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  31347847 gagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgac 31347796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 37986116 - 37986069
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 37986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 39772866 - 39772815
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  39772866 gagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgac 39772815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 41819850 - 41819793
Alignment:
Q  353 taaaatggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||| |||||||| ||||||||||||||||||||||||||||  ||| ||||||||    
T  41819850 taaaatagagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatga 41819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 6108298 - 6108247
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  6108298 gagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgac 6108247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 7017930 - 7017879
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||| |||||||||| | ||||||| ||||||||||||    
T  7017930 gagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgac 7017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 27835518 - 27835467
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||| |||||| |||| ||||||| ||||||||||||    
T  27835518 gagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgac 27835467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 37132723 - 37132672
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||| ||| ||||||||||||||| || |||||||||    
T  37132723 gagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgac 37132672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 25581299 - 25581253
Alignment:
Q  365 atgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgac 25581253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 27782181 - 27782131
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagattcaataatgac 27782131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 7021988 - 7022028
Alignment:
Q  370 atatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatga 7022028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 30055543 - 30055587
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaa 404  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||    
T  30055543 gagcaatgctatataccaaggaagattttatcaaaaaaatttcaa 30055587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 30835112 - 30835061
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||| ||||||||||||||||||||||| | |||| ||||||||||||    
T  30835112 ggagcaatgttatatatcaagaaagattttatcga-aaaaattcaagaatgac 30835061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 24844919 - 24844872
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| ||||||||||| ||||||| ||||||| ||||||||||||    
T  24844919 aatgctacatatcaagaaatattttattaagaaaaattcaagaatgac 24844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 3890413 - 3890459
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||| |||||||||| |||||||||||||||  |||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatga 3890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 28675148 - 28675199
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675148 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 28675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 33695392 - 33695341
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33695392 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33695341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 33696696 - 33696747
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33696696 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33696747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 25986929 - 25986981
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25986929 ggagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgac 25986981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 6127275 - 6127326
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6127275 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 6127326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 17176086 - 17176035
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17176086 gagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgac 17176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 17705530 - 17705479
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 17705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 18365638 - 18365587
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18365638 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18365587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 18370902 - 18370851
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18370902 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18370851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 23291149 - 23291098
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23291149 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 23291098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 18889761 - 18889711
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18889761 gagcaatgctatatatcaagaaaga-tttatcaagaaaatttcaagaatgac 18889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 6031806 - 6031755
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgac 6031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 11548647 - 11548602
Alignment:
Q  366 tgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgac 11548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 32702205 - 32702255
Alignment:
Q  358 tggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||  |||||||||||||| ||| |||||||||||||||||    
T  32702205 tggagcaatgctata--tcaagaaagattttttcatgaaaatttcaagaatga 32702255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 8515787 - 8515755
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaaga 395  Q
    |||||||||||||||||||||||||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaaga 8515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 2309488 - 2309455
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaa 393  Q
    |||||||| |||||||||||||||||||||||||    
T  2309488 gagcaatgttatatatcaagaaagattttatcaa 2309455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 6043576 - 6043525
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6043576 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6043525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 2477636 - 2477687
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2477636 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2477687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 3362778 - 3362829
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3362778 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 3362829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 11361196 - 11361145
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11361145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 38899791 - 38899740
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38899791 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 38899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 14138668 - 14138716
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaat 408  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14138668 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaat 14138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 4892202 - 4892253
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4892202 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 8145379 - 8145426
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgac 8145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 12850801 - 12850852
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgac 12850852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 22913119 - 22913068
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  22913119 gagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgac 22913068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 25398238 - 25398289
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 25398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 33584394 - 33584343
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 4434072 - 4434022
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4434072 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatga 4434022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 37321860 - 37321807
Alignment:
Q  359 ggagcaatgctatatatc-aagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  37321860 ggagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgac 37321807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 3522071 - 3522020
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  3522071 gagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgac 3522020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 12614798 - 12614747
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  12614798 gagcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgac 12614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 17545750 - 17545699
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  17545750 gagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 17545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 27481830 - 27481877
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaaattcaagaatgac 27481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 10458409 - 10458448
Alignment:
Q  372 atatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgac 10458448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 13664642 - 13664679
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaa 397  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  13664642 gagcaatgttatatattaagaaagattttatcaagaaa 13664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 10442854 - 10442803
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10442854 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 10442803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 22199261 - 22199312
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 22199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 31078884 - 31078833
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 31078833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 36072947 - 36072998
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 36072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 49387953 - 49387902
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 49387902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 2624837 - 2624887
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 2624887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 4751446 - 4751497
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4751446 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 4751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 21802387 - 21802336
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21802387 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 21802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 24128239 - 24128290
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24128239 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 24128290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 33530753 - 33530702
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33530753 gagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgac 33530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 47290066 - 47290117
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47290066 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 47290117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 7745176 - 7745126
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 7745126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 24392667 - 24392718
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24392667 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 24392718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 36073354 - 36073401
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 36073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 44893426 - 44893477
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  44893426 gagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgac 44893477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 46441844 - 46441895
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  46441844 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgac 46441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 53123030 - 53123082
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatc-aagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  53123030 gagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgac 53123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 23964530 - 23964479
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  23964530 gagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgac 23964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 37935006 - 37934955
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  37935006 gagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgac 37934955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 50156643 - 50156592
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  50156643 gagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgac 50156592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 44893284 - 44893227
Alignment:
Q  355 aaatggagcaatgctatatatcaagaaagattttatc-aagaaaatttcaagaatgac 411  Q
    |||| |||||||||||||||| |||||||||||| || || |||||||||||||||||    
T  44893284 aaatagagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgac 44893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 25063373 - 25063420
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  25063373 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 25063420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 42671675 - 42671720
Alignment:
Q  366 tgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||| |||||||||||||| |||| || |||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgac 42671720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 6041884 - 6041935
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6041935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 2754717 - 2754768
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2754717 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 3137479 - 3137428
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3137479 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 3137428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 3574592 - 3574541
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3574592 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 11347268 - 11347319
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11347268 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 37217118 - 37217067
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 37217067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 42297353 - 42297404
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42297353 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 42297404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 3456064 - 3456114
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 3456114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 34482975 - 34482925
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34482975 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 34482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 48160905 - 48160955
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 48160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 8320652 - 8320599
Alignment:
Q  357 atggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8320652 atggagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatga 8320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 33113793 - 33113841
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaat 408  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33113793 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaat 33113841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 30385011 - 30385062
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgac 30385062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 19650966 - 19650914
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  19650966 ggagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgac 19650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 37522053 - 37522104
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  37522053 gagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgac 37522104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 9797093 - 9797043
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgac 9797043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 24343547 - 24343591
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaa 404  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  24343547 gagcaatgctatatattaagaaagattttatcaagaaaaattcaa 24343591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 41224232 - 41224284
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||| |||||||||| |||||||||||| ||||||||| ||||||||||||    
T  41224232 ggagcactgctatatattaagaaagattttctcaagaaaaattcaagaatgac 41224284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 42921154 - 42921194
Alignment:
Q  371 tatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgac 42921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 22426409 - 22426358
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||| ||||||| ||||||||||||||||||||||||| || ||||||    
T  22426409 gagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgac 22426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 33145713 - 33145763
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  33145713 gagcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgac 33145763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 36865092 - 36865041
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  36865092 gagcaatgctatatattaaggaagattttattaagaaaattttaagaatgac 36865041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaa 397  Q
    |||||||||||||||||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 40328098 - 40328051
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  40328098 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 40328051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 391
Target Start/End: Complemental strand, 47402661 - 47402630
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatc 391  Q
    ||||||||||||||||||||||||||||||||    
T  47402661 gagcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 33839797 - 33839755
Alignment:
Q  369 tatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||| |||||||||||||||  ||||||||||||    
T  33839797 tatatatcaagaatgattttatcaagaaagattcaagaatgac 33839755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 47738117 - 47738155
Alignment:
Q  372 atatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatga 47738155  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 33839531 - 33839579
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaat 408  Q
    |||||||| ||||||| ||||||||||||||||| |||| || ||||||    
T  33839531 gagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaat 33839579  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 21936081 - 21936131
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 21936131  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 7475573 - 7475522
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7475573 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 7475522  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 9293641 - 9293590
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9293641 gagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgac 9293590  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 23268127 - 23268076
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23268127 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 23268076  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 35160757 - 35160808
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35160757 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 35160808  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 10661888 - 10661938
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 10661938  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 13354846 - 13354896
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 410  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13354846 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatga 13354896  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 33380206 - 33380258
Alignment:
Q  359 ggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  33380206 ggagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33380258  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 14941437 - 14941380
Alignment:
Q  354 aaaatggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  14941437 aaaatagagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgac 14941380  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 31174896 - 31174848
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  31174896 caatgttatatatcaagaaagattttattaagaaaatttcaagaatgac 31174848  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 43330912 - 43330963
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  43330912 gagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgac 43330963  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 9723403 - 9723456
Alignment:
Q  358 tggagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||| |||||||||||||| ||||||  || |||||||||    
T  9723403 tggagcaatgctatatattaagaaagattttattaagaaagatttaagaatgac 9723456  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 21393751 - 21393702
Alignment:
Q  362 gcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||| ||||| ||||||||| || |||||||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgac 21393702  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 22592979 - 22592932
Alignment:
Q  364 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  22592979 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgac 22592932  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 27847632 - 27847683
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||| ||||| |||||||||||||| ||||||  ||||||||||||    
T  27847632 gagcaatgctgtatataaagaaagattttattaagaaagattcaagaatgac 27847683  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 40262748 - 40262714
Alignment:
Q  363 caatgctatatatcaagaaagattttatcaagaaa 397  Q
    ||||| |||||||||||||||||||||||||||||    
T  40262748 caatgttatatatcaagaaagattttatcaagaaa 40262714  T

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Target: scaffold0471 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 12842 - 12893
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12842 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 12893  T

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Target: scaffold0096 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 41011 - 41062
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41011 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 41062  T

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Target: scaffold0085 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 47850 - 47901
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgac 47901  T

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Target: scaffold0204 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 4396 - 4447
Alignment:
Q  360 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4396 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4447  T

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Target: scaffold0665 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 3069 - 3119
Alignment:
Q  361 agcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 3119  T

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Target: scaffold0228 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 8413 - 8453
Alignment:
Q  371 tatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgac 8453  T

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Target: scaffold0228; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 15995 - 16035
Alignment:
Q  371 tatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgac 16035  T

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Target: scaffold0228; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 25947 - 25987
Alignment:
Q  371 tatatcaagaaagattttatcaagaaaatttcaagaatgac 411  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgac 25987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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