View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15212_high_6 (Length: 320)
Name: NF15212_high_6
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15212_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 25739487 - 25739211
Alignment:
| Q |
1 |
ttgtgcttgaattcttctgtgctggttaatcgccttttatgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatgcttg |
100 |
Q |
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| T |
25739487 |
ttgtgctcgaattcttctgtggtggttaatcgcattttacgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatgcttg |
25739388 |
T |
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| Q |
101 |
gtgatcttctcaaagtcaaagttcagtattcctctcaataattgaataagtgcacggatcaacatgataacttgagttatgatcatataaaactttagt- |
199 |
Q |
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| T |
25739387 |
gtgatcttctcaaagtcaaagttcagtattcctctcaataattgaataagtgcacggatcaacatgataacttgagttatgatcatataaaactttagtt |
25739288 |
T |
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| Q |
200 |
ttttatgatccgtcgcctaattctcttggtccttttttgcactctaattatcttgaaaggctactcttctttgttat |
276 |
Q |
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| T |
25739287 |
ttttatgatccgtcgcctaattctcttggtccttttatgcactctaattatcttgaaaggttactcttctttgttat |
25739211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25745506 - 25745260
Alignment:
| Q |
1 |
ttgtgcttgaattcttctgtgctggttaatcgccttttatgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatgcttg |
100 |
Q |
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|||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
25745506 |
ttgttcttgaattcttctgtggtggttaatcgcctttcatgcaacaaaattggccgtgtttgtggctaccagttgattatgcattttagacgaatggttg |
25745407 |
T |
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| Q |
101 |
gtgatcttctcaaagtcaaagttcagtattcctctcaataattgaataagtgcacggatcaacatgataacttgagttatgatcatataaaactttagt- |
199 |
Q |
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| T |
25745406 |
gtgattttgtcaaagtcaaagttcagcatttctttcgataatcgaataagtgtagagaacaacatgataacttgagttgtgatcatgcaaaactatagtt |
25745307 |
T |
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| Q |
200 |
--ttttatgatccgtcgcctaattctcttggtccttttttgcactct |
244 |
Q |
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| T |
25745306 |
aattatatgatcagtctccaaattctcttggtccttttttgcactct |
25745260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 25731455 - 25731319
Alignment:
| Q |
110 |
tcaaagtcaaagttcagtattcctctcaataattgaataagtgcacggatcaacatgataacttgagttatgatcatataaaactttagt-ttttatgat |
208 |
Q |
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| T |
25731455 |
tcaaagtcaaaggttggcattcctttcagtaaccgaataagtgtacggatcaacatgataacttgagtcgtgatcatataaaactttagttttttatgat |
25731356 |
T |
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| Q |
209 |
ccgtcgcctaattctcttggtccttttttgcactctaat |
247 |
Q |
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| T |
25731355 |
cagtcgcctaattctct--gtcattttttgcactctaat |
25731319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 25731801 - 25731707
Alignment:
| Q |
1 |
ttgtgcttgaattcttctgtgctggttaatcgccttttatgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatg |
96 |
Q |
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| T |
25731801 |
ttgtgtttgaattcttctgtggtggttaatcacctttcacgcaacaaaaatggtcgtgtttgtggctaccatttgattat-cattttagaagaatg |
25731707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 25762344 - 25762246
Alignment:
| Q |
6 |
cttgaattcttctgtgctggttaatcgccttttatgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatgcttggtga |
104 |
Q |
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| T |
25762344 |
cttgaattcttatatgatggttaagtgtctttcaagcaacaaaaatgattgtgttagtggctataagttgattatacatattagaagaatgctttgtga |
25762246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45300250 - 45300351
Alignment:
| Q |
1 |
ttgtgcttgaattcttctgtgctggttaatcgccttttatgcaacaaaagtggtcgtgtttgtggctaccagttgattatgcattttagaagaatgcttg |
100 |
Q |
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|||||||||||| |||| || ||||||||||||||| | ||||||||| ||| | |||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
45300250 |
ttgtgcttgaatccttccgtcgtggttaatcgcctttcaggcaacaaaaatgggcatgttaatggctaccagttgattatgcataatagaataatgcttg |
45300349 |
T |
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| Q |
101 |
gt |
102 |
Q |
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|| |
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| T |
45300350 |
gt |
45300351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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