View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15212_high_9 (Length: 217)

Name: NF15212_high_9
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15212_high_9
NF15212_high_9
[»] chr3 (2 HSPs)
chr3 (82-178)||(50507912-50508008)
chr3 (11-83)||(50509692-50509764)
[»] chr8 (4 HSPs)
chr8 (117-174)||(32910916-32910973)
chr8 (82-174)||(1848531-1848629)
chr8 (114-170)||(44953554-44953610)
chr8 (114-174)||(35979556-35979616)
[»] chr7 (1 HSPs)
chr7 (114-174)||(37544791-37544851)
[»] chr2 (1 HSPs)
chr2 (82-111)||(35006196-35006225)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 50508008 - 50507912
Alignment:
Q  82 ttaagttaacctcaacaatgtaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataac 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50508008 ttaagttaacctcaacaatttaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcactgtgcataacatatcaatgttgaacaataac 50507912  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 50509764 - 50509692
Alignment:
Q  11 agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509764 agcagagacattgggattaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 50509692  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 32910916 - 32910973
Alignment:
Q  117 gtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 174  Q
    |||||||||||||||||||| ||||| | | ||| |||||||||||||||||||||||    
T  32910916 gtgttgcaccatcaaataaccgtcatcgtagagttcataacatatcaatgttgaacaa 32910973  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 1848629 - 1848531
Alignment:
Q  82 ttaagttaacctcaacaatgtaaattaa------cgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 174  Q
    |||||||||||||||| |||||||||||      ||| || |||||||||||||||||||| ||| ||| | || || ||||||||||| |||||||||    
T  1848629 ttaagttaacctcaacgatgtaaattaatgttaacgcatgtgtgttgcaccatcaaataaccgtcgttgtaaagggcgtaacatatcaacgttgaacaa 1848531  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 44953554 - 44953610
Alignment:
Q  114 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttga 170  Q
    ||||||||||||||||||||||| ||| ||| | ||| ||||||||||||| |||||    
T  44953554 tgcgtgttgcaccatcaaataaccgtcgttgtaaagttcataacatatcaacgttga 44953610  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 35979616 - 35979556
Alignment:
Q  114 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 174  Q
    ||||||||||||||||||||| |  | |||| | ||| ||||||||||||| |||||||||    
T  35979616 tgcgtgttgcaccatcaaatagccttgattgtagagttcataacatatcaacgttgaacaa 35979556  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 37544791 - 37544851
Alignment:
Q  114 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 174  Q
    |||||| |||||||||||||||| ||| ||| | ||| ||||||||||||| |||||||||    
T  37544791 tgcgtgctgcaccatcaaataaccgtcgttgtagagttcataacatatcaacgttgaacaa 37544851  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 35006196 - 35006225
Alignment:
Q  82 ttaagttaacctcaacaatgtaaattaacg 111  Q
    ||||||||||||||||||||||||||||||    
T  35006196 ttaagttaacctcaacaatgtaaattaacg 35006225  T

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