View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15212_low_1 (Length: 503)
Name: NF15212_low_1
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15212_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 188 - 488
Target Start/End: Original strand, 55869167 - 55869465
Alignment:
| Q |
188 |
gtttgaaaaaatcgtataatcattgttgcagagttaaggtgtatatgatccacaaatagttatttagtatttacaatatatatggagtaagaggggggga |
287 |
Q |
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| T |
55869167 |
gtttgaaaaaatcgtataatcattgttgcagagttaaggtgtatatgatccacaaatagttatttagtatttacaatatatatggagtaagaggggg--a |
55869264 |
T |
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| Q |
288 |
aaagaattnnnnnnnttcaactgaatactnnnnnnnngaatctaaaacaagaagggggcatcttgccatttcattgctgtgtcaatttcttcttagatga |
387 |
Q |
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| T |
55869265 |
aaagaattaaaaaaattcaactgaatactaaaaaaaagaatctaaaacaagaagggggcatcttgccatttcattgttgtgtcaatttcttcttagatga |
55869364 |
T |
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| Q |
388 |
acttgcacttgaaaatcctctcattttcgtcttcccttccatacaaaaaccttttcatcaactcttaaatcacaccctaatgtgacagctctcgatgaag |
487 |
Q |
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| T |
55869365 |
acttgcacttgaaaatcctctcattttcgtcttcccttccatacaaaaaccttttcatcaactcttaaatcacgccctaatgtgacagctctcgatgaag |
55869464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 55869081 - 55869153
Alignment:
| Q |
14 |
atatattaatcctctctctgatggtgcttggatttgaaatgagctacgtgaataaaatacatggattggatgt |
86 |
Q |
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| T |
55869081 |
atatattaatcctctctctgatggtgcttggatttgaaatgagctacgtgaataaaatacatggattgaatgt |
55869153 |
T |
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