View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15212_low_2 (Length: 471)
Name: NF15212_low_2
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15212_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 47030097 - 47029653
Alignment:
| Q |
17 |
caaaccagagttaataattttatttttatgtttatattcatacctaaggttggatttacaccgagatttagtttaagttacaagaaatccgtgccatctt |
116 |
Q |
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| T |
47030097 |
caaaccagagttaataattttatttttatgtttatattcatatctaatgttagatttacactgagatttaatttaagttacaagagacttgtaccatttt |
47029998 |
T |
|
| Q |
117 |
atttaagcatttttgggtgtgacactatgatacatgaaaccaattgtcaaattaaatttggttataannnnnnnnnnnnnatctatatagaactagtatc |
216 |
Q |
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| T |
47029997 |
atttaagcatttttggttgtgacactatgatacatgaaaccaattgtcaaattaaatttggttataa---ttttttttttatctatatagaattagtatc |
47029901 |
T |
|
| Q |
217 |
tatttattctgatgactataactcaattgctaatgnnnnnnnnnnnnnnnnnnnngcatgattcaggtttaaacattgtgttcctcactttttcatctta |
316 |
Q |
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|||||||| ||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||| || |||||| |
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| T |
47029900 |
tatttatttcgatgactataactcaattgctaacg--atatcatattatatatatgcatgattcaggttcaaacactgtgttcctcacttattaatctta |
47029803 |
T |
|
| Q |
317 |
aaagttga-----nnnnnnnnncttctcaaaattgattgttaagtaactatatgcaagggcaactgactttgtcacatcctctattagtaactaactcat |
411 |
Q |
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|||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47029802 |
aaagttgattttttttttctttcttctcaaaattgatttttaactaactatatgcaagtgcaactgactttgtcacatcctctattagtaactaactcat |
47029703 |
T |
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| Q |
412 |
ttttgagtaattgcttgcactgaattgcactttatcagtgagaacctatg |
461 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47029702 |
ttttgagtaattacttgcactgaattgcactttatcagtgagaacctatg |
47029653 |
T |
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