View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15212_low_3 (Length: 414)

Name: NF15212_low_3
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15212_low_3
NF15212_low_3
[»] chr1 (6 HSPs)
chr1 (72-285)||(2373201-2373414)
chr1 (72-285)||(2382657-2382870)
chr1 (72-282)||(2839926-2840136)
chr1 (8-58)||(2373446-2373495)
chr1 (8-58)||(2382576-2382625)
chr1 (191-243)||(1163412-1163464)
[»] chr3 (2 HSPs)
chr3 (72-284)||(1526408-1526620)
chr3 (8-62)||(1526324-1526377)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 72 - 285
Target Start/End: Complemental strand, 2373414 - 2373201
Alignment:
Q  72 agggttagggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacag 171  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||  |||||||||||||    
T  2373414 agggttagggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacag 2373315  T
Q  172 gcatgacattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaat 271  Q
    ||||| | |||| ||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  2373314 gcatgccgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaat 2373215  T
Q  272 aaataccattgcta 285  Q
     |||||||||||||    
T  2373214 gaataccattgcta 2373201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 72 - 285
Target Start/End: Original strand, 2382657 - 2382870
Alignment:
Q  72 agggttagggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacag 171  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||  |||||||||||||    
T  2382657 agggttagggttgagaagggtccaattccaaggttagagatgagatcagaatcgttttgtccgagactcagagaaaagaagagacgctgattggaaacag 2382756  T
Q  172 gcatgacattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaat 271  Q
    ||||| | |||| ||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  2382757 gcatgccgttgaattgttggatcgcgaccttcagctgatggagagtggtggtgttagggtttacgtctaaggaaaacttttcgccgctcggtggcacaat 2382856  T
Q  272 aaataccattgcta 285  Q
     |||||||||||||    
T  2382857 gaataccattgcta 2382870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 2839926 - 2840136
Alignment:
Q  72 agggttagggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  2839926 agggttagggttgagaagggttgaattccaaggttagagatgagatcggaatcgttttgtccgagactcagagaaaggaagagacgttgatcggaaacag 2840025  T
Q  172 gcatgacattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaat 271  Q
    ||||| |||||| ||  ||||| ||||||||||| |||| ||||||||||| |||||||||||||||||| | ||||||||||| | | ||| | |||||    
T  2840026 gcatgccattgaattgttggatcgcgaccttcagttgatggagagtggtggcgttagggtttacgtctaatgcaaacttttcgccgtttggtagcacaat 2840125  T
Q  272 aaataccattg 282  Q
     ||||||||||    
T  2840126 caataccattg 2840136  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 2373495 - 2373446
Alignment:
Q  8 tccttgactaattcctccttttacggtactggaggttgccccaattgtgtc 58  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  2373495 tccttgactaattcatccttt-acggtactggaggttgccccgattgtgtc 2373446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2382576 - 2382625
Alignment:
Q  8 tccttgactaattcctccttttacggtactggaggttgccccaattgtgtc 58  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  2382576 tccttgactaattcatccttt-acggtactggaggttgccccgattgtgtc 2382625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 1163464 - 1163412
Alignment:
Q  191 gattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaagg 243  Q
    |||||| |||||||| |||| ||||||||| | ||||||||||||||||||||    
T  1163464 gattgcaaccttcaggtgatggagagtggtagcgttagggtttacgtctaagg 1163412  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 72 - 284
Target Start/End: Original strand, 1526408 - 1526620
Alignment:
Q  72 agggttagggttgagaagggttgaattccaaggttagagatgagatcgaaatcattttgtccgagactcagagaaaggaagagacattgattggaaacag 171  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||| ||    |||| ||||||||  |||||||||||||    
T  1526408 agggttagggttgagaagggtccaattccaaggttagagatgagatcggaatcgttttgtccgaggcttccggaaaagaagagacgctgattggaaacag 1526507  T
Q  172 gcatgacattgatttcctggattgcgaccttcagctgatagagagtggtggtgttagggtttacgtctaaggaaaacttttcgctgctcggtggaacaat 271  Q
    ||||| | |||| ||  ||||| |||||||||| ||||| || |||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  1526508 gcatgccgttgaattgttggatcgcgaccttcaactgatggacagtggtggcgttagggtttacgtctaaggaaaacttctcgccgctcggtggcacaat 1526607  T
Q  272 aaataccattgct 284  Q
     ||||||||||||    
T  1526608 gaataccattgct 1526620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 1526324 - 1526377
Alignment:
Q  8 tccttgactaattcctccttttacggtactggaggttgccccaattgtgtcgtcg 62  Q
    |||||||||||||||||||||   |||||||||| ||||||| ||||||||||||    
T  1526324 tccttgactaattcctcctttgt-ggtactggagtttgcccctattgtgtcgtcg 1526377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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