View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15212_low_5 (Length: 404)

Name: NF15212_low_5
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15212_low_5
NF15212_low_5
[»] chr2 (3 HSPs)
chr2 (1-364)||(17150740-17151103)
chr2 (10-219)||(28948467-28948677)
chr2 (86-132)||(35996594-35996640)
[»] chr6 (1 HSPs)
chr6 (3-253)||(30491898-30492148)
[»] chr1 (7 HSPs)
chr1 (1-253)||(15114412-15114664)
chr1 (1-253)||(15127428-15127680)
chr1 (66-253)||(15121142-15121330)
chr1 (66-253)||(15145330-15145518)
chr1 (1-79)||(46391783-46391861)
chr1 (18-219)||(8681628-8681829)
chr1 (32-161)||(12266341-12266470)
[»] scaffold0291 (1 HSPs)
scaffold0291 (56-198)||(15874-16016)
[»] scaffold0013 (1 HSPs)
scaffold0013 (134-198)||(99234-99298)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 17151103 - 17150740
Alignment:
Q  1 aacacttacctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||     
T  17151103 aacacttacctcagacattccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatgcggaggctttcccaagacttgg 17151004  T
Q  101 ttcttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17151003 ttcttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagttcgtttgtcatactcacgaattctagcccataaatccaaac 17150904  T
Q  201 cgctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgactgaattatttgagcttccaaaatctgctcagttgcatcatcattggaa 300  Q
     || || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  17150903 tgcgctaaatgtttttgctggtgtgtgcctcttggtgctgcaccgtagtgactgaattatttgagcttccaaaatctgctcaattgcatcatcattagaa 17150804  T
Q  301 ttaacatgcataatctgcccatcattagaattaactagtgtgggatagacatctgtgggttgct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17150803 ttaacatgcataatctgcccatcattagaattaactagtgtgggatggacatctgtggggtgct 17150740  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 28948677 - 28948467
Alignment:
Q  10 ctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttg-tttcttcct 108  Q
    ||||||| |||||||||||||||||||||||  || ||||| |||||||||||| | ||||||  ||||  | |||||||| | |||||| ||| |||||    
T  28948677 ctcagacattccaatataacagattcattggtcagttggaggaggaccaccccttgcacgggttgtataatgcggctttccgaggacttgtttttttcct 28948578  T
Q  109 tgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaaccgctctga 208  Q
      |||||| ||| |  ||  | ||||||||||| ||||| || ||||| ||||||| ||| || ||  | ||||||||||| || |||||||| ||||      
T  28948577 accttgctgctgtttttttgtgagtacttgcgtgaatccttcttcagcggtccgttggtcgtattcttggattctagcccataactccaaaccactctat 28948478  T
Q  209 atgtttttgct 219  Q
    |||||||||||    
T  28948477 atgtttttgct 28948467  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 35996640 - 35996594
Alignment:
Q  86 tttcccaagacttgtttcttccttgcttgcttctgctgcttgcttag 132  Q
    |||||||||||||| |||||||||| ||| ||||||| |||||||||    
T  35996640 tttcccaagacttgattcttccttgtttgtttctgcttcttgcttag 35996594  T

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Target: chr6 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 30492148 - 30491898
Alignment:
Q  3 cacttacctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgttt 102  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||| ||||| ||    
T  30492148 cacttacctcggacgttccaataaaccaaattcattggatagatggagaaggaccaccgcttgtacgagtgttatacggcggctttcccaatacttggtt 30492049  T
Q  103 cttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaaccg 202  Q
    |||||||| ||| || |||| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||     
T  30492048 cttccttgtttgtttttgcttcttgcttaatacttgcgtaaatccctcctcggcagtccgttggtcatactcacgaattctagcccataaatccaaacca 30491949  T
Q  203 ctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgact 253  Q
    |||||||||||||||||| | ||||||||||| || ||||| |||||||||    
T  30491948 ctctgaatgtttttgctgatgtgtgcctcttgttgttgcacagtagtgact 30491898  T

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Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 15114412 - 15114664
Alignment:
Q  1 aacacttacctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgt 100  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||| | |||||||||||||||||     
T  15114412 aacactcacctcggacgttccaatataacaaattcattggatagatggagaaggaccactccttgtacgagtgttatacggcggctttcccaagacttgg 15114511  T
Q  101 ttcttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaac 200  Q
    ||||||||||  || ||||||| ||||| | |||||||||||||||||||||| | |||||  | |||||||||||||||||||||||| ||||||||||    
T  15114512 ttcttccttgaatgtttctgcttcttgcctggtacttgcgtaaatccctcctcggtagtccactggtcatactcacgaattctagcccaaaaatccaaac 15114611  T
Q  201 cgctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgact 253  Q
      |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  15114612 tactctgaatgtttttgctggtgtgtgcctcttgttgctgcacagtagtgact 15114664  T

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Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 15127428 - 15127680
Alignment:
Q  1 aacacttacctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgt 100  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||| | |||||||||||||||||     
T  15127428 aacactcacctcggacgttccaatataacaaattcattggatagatggagaaggaccactccttgtacgagtgttatacggcggctttcccaagacttgg 15127527  T
Q  101 ttcttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaac 200  Q
    ||||||||||  || ||||||| ||||| | |||||||||||||||||||||| | |||||  | |||||||||||||||||||||||| ||||||||||    
T  15127528 ttcttccttgaatgtttctgcttcttgcctggtacttgcgtaaatccctcctcggtagtccactggtcatactcacgaattctagcccaaaaatccaaac 15127627  T
Q  201 cgctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgact 253  Q
      |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  15127628 tactctgaatgtttttgctggtgtgtgcctcttgttgctgcacagtagtgact 15127680  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 15121142 - 15121330
Alignment:
Q  66 tacgggtgttatacagaggctttcccaagacttgtttcttcctt-gcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtt 164  Q
    |||| |||||||||   ||||||||||||||||| ||||| |||   ||  ||||||| ||||||| |||||||| ||||||||||||| | |||||| |    
T  15121142 tacgagtgttatacgacggctttcccaagacttggttctttcttattttttttctgcttcttgcttggtacttgcttaaatccctcctcggtagtccgct 15121241  T
Q  165 tgtcatactcacgaattctagcccacaaatccaaaccgctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgact 253  Q
     |||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| | ||||||||||| |||||||| |||||||||    
T  15121242 ggtcatactcacgaattctagcccataaatccaaaccactttgaatttttttgctgttgtgtgcctcttgttgctgcacagtagtgact 15121330  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 15145330 - 15145518
Alignment:
Q  66 tacgggtgttatacagaggctttcccaagacttgtttcttcctt-gcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtt 164  Q
    |||| |||||||||   ||||||||||||||||| ||||| |||   ||  ||||||| ||||||| |||||||| ||||||||||||| | |||||| |    
T  15145330 tacgagtgttatacgacggctttcccaagacttggttctttcttattttttttctgcttcttgcttggtacttgcttaaatccctcctcggtagtccgct 15145429  T
Q  165 tgtcatactcacgaattctagcccacaaatccaaaccgctctgaatgtttttgctggtttgtgcctcttggtgctgcaccgtagtgact 253  Q
     |||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| | ||||||||||| |||||||| |||||||||    
T  15145430 ggtcatactcacgaattctagcccataaatccaaaccactttgaatttttttgctgttgtgtgcctcttgttgctgcacagtagtgact 15145518  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 46391783 - 46391861
Alignment:
Q  1 aacacttacctcagacgttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatac 79  Q
    |||||||||||| |||||||||||| | |||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  46391783 aacacttacctcggacgttccaataaaccagaatcattagatagatggagaaggaccaccccttgtacgggtgttatac 46391861  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 8681628 - 8681829
Alignment:
Q  18 ttccaatataacagattcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgtttcttccttgcttgctt 117  Q
    |||||||||||||||||||||||  || ||||| | |||||||| | | |||||| |||||  | |||||||| | ||||||||| ||| | |||||||     
T  8681628 ttccaatataacagattcattgggcagttggaggatgaccaccctttgcacgggttttataatgcggctttccgaggacttgttttttcatagcttgctg 8681727  T
Q  118 ctgctgcttgcttagtacttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaaaccgctctgaatgtttttg 217  Q
    ||||| |||    ||||||||||| ||||| |   | |||||||||| ||| || || || ||||||||||| || |||||| | || || |||||||||    
T  8681728 ctgcttctttgagagtacttgcgttaatccttttgctgcagtccgttggtcgtattcgcggattctagcccataattccaaatcactatgtatgtttttg 8681827  T
Q  218 ct 219  Q
    ||    
T  8681828 ct 8681829  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 12266470 - 12266341
Alignment:
Q  32 attcattggatagatggagaaggaccacccctagtacgggtgttatacagaggctttcccaagacttgtttcttccttgcttgcttctgctgcttgctta 131  Q
    |||||||||  |||||||| |||| ||||||| | ||||||  ||||  | | ||||||||||||| |||| ||| ||| ||||||||| | |||| |||    
T  12266470 attcattgggcagatggaggaggatcacccctcgcacgggttctataaggcgactttcccaagactagttttttcattgtttgcttctgtttcttggtta 12266371  T
Q  132 gtacttgcgtaaatccctcctcagcagtcc 161  Q
      ||||| ||||||||||| || |||||||    
T  12266370 agacttgtgtaaatccctcgtctgcagtcc 12266341  T

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Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 15874 - 16016
Alignment:
Q  56 ccacccctagtacgggtgttatacagaggctttcccaagacttgtttcttccttgcttgcttctgctgcttgcttagtacttgcgtaaatccctcctcag 155  Q
    |||||||| ||||| |||||||||| ||  ||||| || |||||||| |||  |||||| |  ||||  |||   || ||||| || ||||| ||||| |    
T  15874 ccaccccttgtacgagtgttatacaaagattttcctaaaacttgttttttctgtgcttgttgttgcttattggaaagaacttgagtgaatccttcctccg 15973  T
Q  156 cagtccgtttgtcatactcacgaattctagcccacaaatccaa 198  Q
    | |||||||||||||| ||||||||||||||||| ||||||||    
T  15974 cggtccgtttgtcatattcacgaattctagcccataaatccaa 16016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 99298 - 99234
Alignment:
Q  134 acttgcgtaaatccctcctcagcagtccgtttgtcatactcacgaattctagcccacaaatccaa 198  Q
    ||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| ||||||||    
T  99298 acttgagtgaatccttcctccgcggtccgtttgtcatattcacgaattctagcccataaatccaa 99234  T

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