View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15212_low_6 (Length: 353)

Name: NF15212_low_6
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15212_low_6
NF15212_low_6
[»] chr8 (4 HSPs)
chr8 (72-326)||(5022011-5022266)
chr8 (245-326)||(23712071-23712157)
chr8 (13-45)||(5022248-5022280)
chr8 (128-171)||(23712231-23712275)
[»] chr5 (3 HSPs)
chr5 (44-128)||(41654553-41654637)
chr5 (44-128)||(41647018-41647102)
chr5 (44-128)||(41620886-41620970)
[»] chr2 (1 HSPs)
chr2 (44-128)||(2433488-2433572)
[»] chr6 (1 HSPs)
chr6 (44-128)||(12438414-12438498)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 72 - 326
Target Start/End: Complemental strand, 5022266 - 5022011
Alignment:
Q  72 gaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttt-actatgagtgcctatcaattatt 170  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5022266 gaatgcacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttttactatgagtgcctatcaattatt 5022167  T
Q  171 gttggtgctattataccgtgttttgctgcttttgggagtgcgcggcgtggactagagggtgtgannnnnnnngctggtggattcttttgtcccctttctt 270  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  5022166 gttggtgctattatactgtgttttgctgcttttgggagtgcgcggcgtggactagagggtgtgattttttttgctggtggattcttttgtcccctttctt 5022067  T
Q  271 cttggccacatgaatggattcgagtatgctgacaccaagaaagccatcaacatgtg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5022066 cttggccacatgaatggattcgagtatgctgacaccaagaaagccatcaacatgtg 5022011  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 23712157 - 23712071
Alignment:
Q  245 tggtggattcttttgtcccctttcttcttggccacatgaatggattcgagt-----atgctgacaccaagaaagccatcaacatgtg 326  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |     ||||| || |||| |||||||||||||||||    
T  23712157 tggtggattcttttgtcccctttcttcttggccacgtgaatggattcgattcgattatgctcactccaacaaagccatcaacatgtg 23712071  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 5022280 - 5022248
Alignment:
Q  13 taaagaaaccttaagaatgcacaataccagcag 45  Q
    |||||||||||||||||||||||||||||||||    
T  5022280 taaagaaaccttaagaatgcacaataccagcag 5022248  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 23712275 - 23712231
Alignment:
Q  128 atggattattttccatcttt-actatgagtgcctatcaattattg 171  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||    
T  23712275 atggattattttccatattttactatgagtgcccatcaattattg 23712231  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 41654553 - 41654637
Alignment:
Q  44 agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 128  Q
    |||||||||||||||||||||||| | || ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||    
T  41654553 agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaaga 41654637  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 41647018 - 41647102
Alignment:
Q  44 agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 128  Q
    |||||||||||||||||||||||| | || ||||||||||||||| |||||||||||  |||||||| |||||||||||||||||    
T  41647018 agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaattcatgggcaattggaaga 41647102  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 41620970 - 41620886
Alignment:
Q  44 agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 128  Q
    |||||||  ||||||||||||||| | || |||||||||||| |  |||||||| ||  | |||||| |||||||||||| ||||    
T  41620970 agagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaacacacgtgttagtgaatacatgggcaattgcaaga 41620886  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 2433488 - 2433572
Alignment:
Q  44 agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 128  Q
    |||||||||||||||||||||||||| || ||||||||||||| | |||||||||||  ||||||||| ||||||||| ||||||    
T  2433488 agagtgtattgaaacttgtgagattaatggatacacaataccatctggaacacaagtgtttgtgaatggatgggcaataggaaga 2433572  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 12438498 - 12438414
Alignment:
Q  44 agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga 128  Q
    |||||||||||||| ||||| | |||  | ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  12438498 agagtgtattgaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaaga 12438414  T

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