View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15212_low_8 (Length: 292)
Name: NF15212_low_8
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15212_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 46723387 - 46723126
Alignment:
| Q |
15 |
cataggtatatgattaataactaaattagtaagggagttagaaacataatgaaattaagatgtagatggtatacaacttactaataagcatctctgagac |
114 |
Q |
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| T |
46723387 |
cataagtatatgattaataactaaattagtaagggagttagaaacataatgaaattaagatttagatagtataaaacttactaataagcatctctgagac |
46723288 |
T |
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| Q |
115 |
caccaagtttttcttggccagcagtgtcccagcaattaaaccgaatttttccacaatttgtataaaagtctagtggatgaacctccacaccaatggtagc |
214 |
Q |
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| T |
46723287 |
caccaaattttccttggccagcagtgtcccagcaattaaaccgaatttttccacaatttgtataaaagtctagtggatgaacctccacaccaatggtagt |
46723188 |
T |
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| Q |
215 |
tgttgtattgcaaaattaaattaattaaatgaattaatgaatgattagacatgcataatatg |
276 |
Q |
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| T |
46723187 |
tgttgtattgcaaaattaaattaattaaatgaattaatgaatgattaggcatgcataatatg |
46723126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 46626228 - 46626309
Alignment:
| Q |
160 |
tttttccacaatttgtataaaagtctagtggatgaacctccacaccaatggtagctgttgtattgcaaaattaaattaatta |
241 |
Q |
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| T |
46626228 |
tttttccacaatttgaatgaaagtctagtagatgaacctccacaccaatggtagatgttatattgtaaaatcaaattaatta |
46626309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 49686227 - 49686355
Alignment:
| Q |
90 |
acttactaataagcatctctgagaccaccaagtttttcttggccagcagtgtcccagcaattaaaccgaatttttccacaatttgtataaaagtctagtg |
189 |
Q |
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| T |
49686227 |
acttactagtatccatctctgaggccaccaaacttctcttgtccagcagtatcccagcagtagaaccgaatctttccgcagtttgtgaagaaatccaatg |
49686326 |
T |
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| Q |
190 |
gatgaacctccacaccaatggtagctgtt |
218 |
Q |
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| T |
49686327 |
gatgcacttccacaccaattgtagctgtt |
49686355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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