View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15212_low_9 (Length: 271)
Name: NF15212_low_9
Description: NF15212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15212_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 11119686 - 11119442
Alignment:
| Q |
17 |
gaagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtg |
116 |
Q |
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| T |
11119686 |
gaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtg |
11119587 |
T |
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| Q |
117 |
gcggatgaagttgaaggcaatgttggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaattaaaggcacacactttaatgaca |
216 |
Q |
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| T |
11119586 |
gcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgaca |
11119487 |
T |
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| Q |
217 |
gtgaagaagagaggatggctggggttgatgataggtttgatgatg |
261 |
Q |
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| T |
11119486 |
gtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 12206172 - 12205970
Alignment:
| Q |
40 |
ttgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgt |
139 |
Q |
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| T |
12206172 |
ttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgt |
12206073 |
T |
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| Q |
140 |
tggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaattaaaggcacacactttaatgacagtgaagaagagaggatggctggg |
239 |
Q |
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| T |
12206072 |
tggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggg |
12205973 |
T |
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| Q |
240 |
gtt |
242 |
Q |
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| T |
12205972 |
gtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 32741389 - 32741144
Alignment:
| Q |
18 |
aagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtgg |
117 |
Q |
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| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
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| Q |
118 |
cggatgaagttgaaggcaatgttggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaattaaaggcacacactttaatgacag |
217 |
Q |
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| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatag |
32741190 |
T |
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| Q |
218 |
tgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
263 |
Q |
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| T |
32741189 |
tgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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