View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15213_high_2 (Length: 483)
Name: NF15213_high_2
Description: NF15213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15213_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 32244238 - 32244628
Alignment:
| Q |
13 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32244238 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32244336 |
T |
|
| Q |
113 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244337 |
tgcctatgaattcttaatttcctacacatcacattaagatat--atgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
32244434 |
T |
|
| Q |
213 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244435 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
32244534 |
T |
|
| Q |
313 |
cactctactttattcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
406 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
32244535 |
cactttacttaattcatttacagttttcattaagcagtaacagtgttgctcagactcaaatatatagatgtatgtagtgattaaagtagaaatt |
32244628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 32249947 - 32250337
Alignment:
| Q |
13 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32249947 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32250045 |
T |
|
| Q |
113 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||| |
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| T |
32250046 |
tgcctatgaattcttaatttcctacacatcacattatgatagatatgtgca--gagacatcacagagggtatatttgttgctatcttcacatatggaatc |
32250143 |
T |
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| Q |
213 |
atgactgcagttaaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
312 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250144 |
ctgactgcagttaaatgaatgagaacaaatatatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttcttttt |
32250243 |
T |
|
| Q |
313 |
cactctactttattcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250244 |
cactctactttattcatttacagttttcattaagccgtaacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
32250337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 32254767 - 32254912
Alignment:
| Q |
13 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32254767 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgca |
32254866 |
T |
|
| Q |
113 |
tgcctataaattcttaatttcctacacatcacattaagatatatat |
158 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
32254867 |
tgcctatgaattcttaatttcctacacatcacattattatatatat |
32254912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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