View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15213_high_3 (Length: 402)

Name: NF15213_high_3
Description: NF15213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15213_high_3
NF15213_high_3
[»] chr3 (8 HSPs)
chr3 (24-382)||(29821876-29822219)
chr3 (58-109)||(49333873-49333923)
chr3 (33-107)||(54653010-54653085)
chr3 (54-107)||(43102304-43102357)
chr3 (14-109)||(33149973-33150069)
chr3 (54-109)||(47807849-47807904)
chr3 (64-109)||(12992033-12992077)
chr3 (64-109)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (110-252)||(40880222-40880364)
chr5 (54-109)||(1663507-1663562)
chr5 (60-109)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (28-107)||(118777-118856)
chr8 (54-109)||(5777111-5777166)
chr8 (64-109)||(45436181-45436225)
chr8 (54-98)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (17-61)||(24546535-24546579)
chr6 (350-383)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (33-107)||(3978364-3978439)
chr1 (64-109)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (33-109)||(38407199-38407275)
chr7 (54-107)||(19279339-19279392)
chr7 (60-109)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (33-109)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (33-107)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 382
Target Start/End: Complemental strand, 29822219 - 29821876
Alignment:
Q  24 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
Q  124 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
Q  224 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 323  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
T  29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
Q  324 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 29821876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
Q  58 atcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
Q  33 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    ||||| |||||||||||| |||||||||||  |||||| |||||||||||||||    
T  43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 33149973 - 33150069
Alignment:
Q  14 catcatcaacaacaagaaca-tttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    ||||| ||||||||| |||| ||| || || |||||| || || || |||||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  33149973 catcaacaacaacaacaacaattttttaatcacaataacaacagcagcaacctttgcaagaaccataaacaccccaatggcaatttcaacaacaaca 33150069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 47807904 - 47807849
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    ||||| |||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  47807904 caacaacaaccttttcgacaaccacaaacatcttaatctcaatttcaacaacaaca 47807849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 12992077 - 12992033
Alignment:
Q  64 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  12992077 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 12992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 50259425 - 50259469
Alignment:
Q  64 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  50259425 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 50259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
Q  110 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 209  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
Q  210 tcatgattcgataaacgtacaatcattcaaatacatattacat 252  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
T  40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    ||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
Q  60 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
Q  28 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||| ||||||||||||||||||||||| |||||    
T  118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
T  5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 45436225 - 45436181
Alignment:
Q  64 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  45436225 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 45436181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 7487188 - 7487145
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaattt 98  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  7487188 caacatcaaccttttcataa-ccataaacaccccaatctcaattt 7487145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24546579 - 24546535
Alignment:
Q  17 catcaacaacaagaacatttcttcattacaatatcagcaacatca 61  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  24546579 catcaacaacaagaacatttcttcatcacaataccagcaacatca 24546535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 4030751 - 4030718
Alignment:
Q  350 taaactatttaacatatataattttgatgatgtc 383  Q
    ||||||||||||||| ||||||||||||||||||    
T  4030751 taaactatttaacatgtataattttgatgatgtc 4030718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
Q  33 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 38961817 - 38961773
Alignment:
Q  64 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  38961817 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 38961773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
Q  33 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||    
T  38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 19279392 - 19279339
Alignment:
Q  54 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||||    
T  19279392 caacaacaaccttttcaacaaccacaaacatctcaaactcaattttaacaacaa 19279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 25154668 - 25154619
Alignment:
Q  60 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    |||| ||||||| |||||||||||| |||||||||| | |||||||||||    
T  25154668 caactttttcaacaaccacaaacactccaatctcaaatccaacaacaaca 25154619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
Q  33 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 109  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 34039627 - 34039702
Alignment:
Q  33 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 107  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||| |  |||||| |||||||||||||||    
T  34039627 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaatattccaatcccaatttcaacaacaa 34039702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University