View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15213_high_5 (Length: 341)
Name: NF15213_high_5
Description: NF15213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15213_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 20670867 - 20670539
Alignment:
| Q |
13 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggagg |
112 |
Q |
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| T |
20670867 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggagg |
20670768 |
T |
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| Q |
113 |
aggtcagtgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtg |
212 |
Q |
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| T |
20670767 |
aggtcagcgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtg |
20670668 |
T |
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| Q |
213 |
ttaggctaagtgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
312 |
Q |
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| T |
20670667 |
ttaggctaagtgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
20670568 |
T |
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| Q |
313 |
ttgcattgccaatggtggagttgatgatg |
341 |
Q |
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| T |
20670567 |
ttgcattgccaatggtggagttgatgatg |
20670539 |
T |
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