View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15213_high_7 (Length: 308)
Name: NF15213_high_7
Description: NF15213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15213_high_7 |
 | |
|
| [»] chr1 (10 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 13095186 - 13095469
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
13095186 |
gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctcc |
13095285 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13095286 |
accttcttctgaatggattgttcgaccatgttcttgaagcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
13095385 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13095386 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttg |
13095469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 13162308 - 13162591
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |
|
|
| T |
13162308 |
gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtcc |
13162407 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13162408 |
accttcttctgaatggaatgttggaacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaat |
13162507 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13162508 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaaaattcttctttg |
13162591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 13130615 - 13130898
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
13130615 |
gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacatgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctcc |
13130714 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13130715 |
accttcttctgaatggattgttcgaacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcttgtttccatacatcgtcggaat |
13130814 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
13130815 |
cagaattgaaaatactacctccaagaacttcaaaaatgtcatgatattttgaccctttcctgtagttgccacaattcttctttg |
13130898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 30367510 - 30367268
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||| ||||| ||||||||||| ||| ||||||||| ||||||| || |||||||||||||||||||||| |||||||| ||| | || ||| |
|
|
| T |
30367510 |
gcagatgctgtcaaaagtgaacctattcaagatatcttgcaagtccacctcagaacctgcttcagatacatcattaataaatggtagtaggaatttctcc |
30367411 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
| ||| || | | | | ||||| ||||| ||||||||| ||||||||| |||||| |||||||||||| | ||| || |||||||| ||| ||||| |
|
|
| T |
30367410 |
agcttttttttactagtttgttggaacaagttcttgaagcttttccttttgagaattgaatgaaacattgccctcttctctttccata---cgtgggaat |
30367314 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaa |
270 |
Q |
| |
|
||||||||| ||||| |||||||| || ||||||||| || ||||| |
|
|
| T |
30367313 |
cagaattgacaataccacctccaaaaaattcaaaaatttcttggaa |
30367268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 13069593 - 13069318
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||||||||| ||||||||| | |||||||| | || ||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
13069593 |
gcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccacctgagcacctatttcagatacatcattaagaaatggtagtaggtagttctcc |
13069494 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
| ||| |||| || | ||||| ||| | ||||||||| |||||||| ||||| | |||||||||||||| ||| |||||||||| ||| ||||| |
|
|
| T |
13069493 |
agctttttcttcatagtttgttggaagaagttcttgaaggttttccttttaagaaatgaatgaaacattgtcctctgttgtttccata---cgtgggaat |
13069397 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattctt |
303 |
Q |
| |
|
|||||| ||||||| | |||||| || |||||||| || | ||| || ||||| | |||||||||||| |||||| |
|
|
| T |
13069396 |
tagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattctt |
13069318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 14708221 - 14708384
Alignment:
| Q |
30 |
tgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatccacctt |
129 |
Q |
| |
|
|||| ||||| ||||||||||| ||| ||||||| |||||||||||||| ||| |||| ||||||| |||||||||||||| | | | || |||| | | |
|
|
| T |
14708221 |
tgctgtcaaaagtgaacctattcaagacatcttgtaaatccacctgagcacctacttctgatacatgattaagaaatggtagtaagcaattttccaacct |
14708320 |
T |
|
| Q |
130 |
cttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacatt |
193 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||| |||||| || | |||||||||||||||| |
|
|
| T |
14708321 |
cttctgaatggtttgttggaagaagttcttgaagcttttctttttgataattaaatgaaacatt |
14708384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 303
Target Start/End: Original strand, 13205246 - 13205521
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||||||||| ||||||||| | |||||||| | || |||| |||||| ||| |||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
13205246 |
gcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccagctgagcacctatttcagatacatcatcaagaaatggtagtaggtagttctcc |
13205345 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat |
224 |
Q |
| |
|
| ||| |||| || | ||||| ||| | ||||||||| |||||||| |||| | |||||||||||||| ||| |||||||||| ||| ||||| |
|
|
| T |
13205346 |
agctttttcttcatagtttgttggaagaagttcttgaaggttttccttttgagaaatgaatgaaacattgtcctctgttgtttccata---cgttggaat |
13205442 |
T |
|
| Q |
225 |
cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattctt |
303 |
Q |
| |
|
|||||| ||||||| | |||||| || |||||||| || | ||| || ||||| | |||||||||||| |||||| |
|
|
| T |
13205443 |
tagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattctt |
13205521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 13007975 - 13008145
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc |
124 |
Q |
| |
|
|||| |||| ||||| ||||||||| | |||||||| | || ||||||||||| ||| |||||||||||||||||||||||||| | | |||| ||| |
|
|
| T |
13007975 |
gcagatgctgtcaaaagtgaacctactcaaggcatcctccaggtccacctgagcacctatttcagatacatcattaagaaatggtagtaagcagttctcc |
13008074 |
T |
|
| Q |
125 |
accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgt |
195 |
Q |
| |
|
||||| |||| || | ||||| ||| | ||||||||| |||||||| |||| | ||||||||||||| |
|
|
| T |
13008075 |
acctttttcttcatagtttgttggaaaaagttcttgaaggttttccttttgagaaatgaatgaaacattgt |
13008145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 13067567 - 13067510
Alignment:
| Q |
41 |
gtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcat |
98 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
13067567 |
gtgaacctactcaaggcatcttgcaagtccacctgagaacctgcttcagacacatcat |
13067510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 13101775 - 13101860
Alignment:
| Q |
25 |
gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggta |
110 |
Q |
| |
|
|||| |||| ||||| ||||||||| ||||| |||| | || ||||| ||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
13101775 |
gcagatgctgtcaaaagtgaacctactaaagacatcctccaggtccacatgagcacctatttcagatacatcattaagaaacggta |
13101860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 31376409 - 31376527
Alignment:
| Q |
149 |
aacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaatcagaattgaaaatactacctccaa |
248 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||| |||||||||||||| ||| || |||||||| ||| |||||||||||||| ||||| |||||||| |
|
|
| T |
31376409 |
aacaagttcttgaagcttttccttttgagaattgaatgaaacattgtcctcttctctttccata---cgtgggaatcagaattgacaataccacctccaa |
31376505 |
T |
|
| Q |
249 |
gaacttcaaaaatatcatggaa |
270 |
Q |
| |
|
|| ||||||||| || ||||| |
|
|
| T |
31376506 |
aaaattcaaaaatttcttggaa |
31376527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University