View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15213_low_1 (Length: 423)
Name: NF15213_low_1
Description: NF15213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15213_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 25168221 - 25168612
Alignment:
| Q |
16 |
atcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggcc |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25168221 |
atcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggtttttggataatctccattggcc |
25168320 |
T |
|
| Q |
116 |
aagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagcttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25168321 |
aagggatccataaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagtttt |
25168420 |
T |
|
| Q |
216 |
atctttttaatgaacttaccatccaaacataaagtctgtagctcgttcagcagcctttatatcaagtttgctatctgagagtggcacaaaatagttaata |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25168421 |
atctttgtaatgaacttaccatccaaacataaagtctgtagctcgttcagcagcctttatatcaagtttattatctgagagtggcacaaaatagttaata |
25168520 |
T |
|
| Q |
316 |
accaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25168521 |
accaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 25253045 - 25252654
Alignment:
| Q |
16 |
atcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggcc |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25253045 |
atcaaatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgatctgactaaggctctcatggttttaggataatctccattggcc |
25252946 |
T |
|
| Q |
116 |
aagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatatctccttaattgtgttaatttggatggtataattatataagcttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25252945 |
aagggatccataaacctataattaaacaaagaaattgaataagttatcatataaatctccttaattgtgttaatttggatggtataattatataagtttt |
25252846 |
T |
|
| Q |
216 |
atctttttaatgaacttaccatccaaacataaagtctgtagctcgttcagcagcctttatatcaagtttgctatctgagagtggcacaaaatagttaata |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25252845 |
atctttgtaatgaacttaccatccaaacataaagtctgtagctcgttcagcagcctttatatcaagtttattatctgagagtggcacaaaatagttaata |
25252746 |
T |
|
| Q |
316 |
accaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25252745 |
accaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 25179886 - 25180280
Alignment:
| Q |
16 |
atcatatgaaccactcactagcttagattgctcttttgtaaactttggtaaccttgttctgactaatgctctcatggttttaggataatctccattggcc |
115 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||| ||||||||||||||| || |
|
|
| T |
25179886 |
atcaaatgaaccactgacttgcttagattgctcttttgtaaactttggtaaccttgatctaaccaaggctctcatggtttttggataatctccattgacc |
25179985 |
T |
|
| Q |
116 |
aagggatccataaacctataattaaacaaagaaatcgaataagttatcatatatatctcctta--------attgtgttaatttggatggtataattata |
207 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||| |||||||||||||||||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
25179986 |
aagggatccataaacctataattatatatagaaatggaataagttatcatatatatatatatatatatatgcttgtgttaatttgggtggtataattatg |
25180085 |
T |
|
| Q |
208 |
taagctttatctttttaatgaacttaccatccaaacataaagtctgtagctcgttcagcagcctttatatcaagtttgctatctgagagtggcacaaaat |
307 |
Q |
| |
|
| |||||||| || || |||||||||||||| |||||||||| |||||||||||| ||| ||| ||||| ||||||||| |||||| | |
|
|
| T |
25180086 |
ttagctttatgtt-----tgtacttaccatccaaattgaaagtctgtatttcgttcagcagcatttttattttgtttgttatctgagaacggcacagacc |
25180180 |
T |
|
| Q |
308 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
407 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25180181 |
agttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
25180280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University