View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15214_high_5 (Length: 298)
Name: NF15214_high_5
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 33754640 - 33754361
Alignment:
| Q |
9 |
acatcatcaaataggcagttgtgattccaactaacatagtaaacacaacaaaaatatttttaggaaataggatccaccgtactttctttttgccacgtac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
33754640 |
acatcatcaaataggcagttgtgattccaactaacatagtaaacacaacaaaaatatttttaggaaataggatccaccgtagtttctttttgccacgttc |
33754541 |
T |
|
| Q |
109 |
atgctgtcaagacattgttagccgttcaatattaattgaacaatttnnnnnnnnntaaacttaatttttagtgtttaattttaaaatatcgaactcaaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33754540 |
atgctgtcaagacattgttagccgttcaatattaattgaacaattt-aaaaaaaatagacttaatttttagtgtttaattttaaaatatcgagctcaaat |
33754442 |
T |
|
| Q |
209 |
taagaccgcttaatcttgattgaacagtcactaaagcatgactacgttattgcgttgttttgttgattacatcaaatcgtg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33754441 |
caagaccgcttaatcttgattgaacagtcactaaagcatgactatgttattgcgttgttttgttgattacatcaaatcgtg |
33754361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 39613266 - 39613367
Alignment:
| Q |
189 |
ttaaaatatcgaactcaaattaagaccgcttaatcttgattgaacagtcactaaagcatgactacgttattgcgttgttttgttgattacatcaaatcgt |
288 |
Q |
| |
|
|||||||| ||||||||||| |||| | | ||||| ||| ||| ||||| ||| |||||||||| |||| ||||||||| ||| |||| |||||||| |
|
|
| T |
39613266 |
ttaaaataccgaactcaaatcaagagtgttcgatcttaattcaacggtcaccaaaatatgactacgtaattgagttgttttgctgactacaacaaatcgt |
39613365 |
T |
|
| Q |
289 |
gg |
290 |
Q |
| |
|
|| |
|
|
| T |
39613366 |
gg |
39613367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University