View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15214_high_7 (Length: 268)
Name: NF15214_high_7
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_high_7 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 22020604 - 22020347
Alignment:
| Q |
11 |
cagagatttcacaggaaggaaagaaagcagttctgtgataatctcatcagggagaactatcggcgatgattccaagctggacggacgctgctgcaacttc |
110 |
Q |
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| T |
22020604 |
cagagatttcactggaaggaaagaaagcagttctgtgataatctcatcagggagaattatcggcgatgattccaagctggacggacgctgctgcgacttc |
22020505 |
T |
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| Q |
111 |
ggtggtgagagattcatgagagccgtaaattatgttaccgcaaagcgtaaaagagcaattttgtgatcaatgagcacaattgagagattatatacaaaga |
210 |
Q |
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| T |
22020504 |
ggtggtgagagattcatgagagccgtaaattatgttaccgcaaagcgtaaaagagcaattttgtgatcaatgaacacaattgagagattatatacaaaga |
22020405 |
T |
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| Q |
211 |
attgtgtaaattagctgccgtcgggaagcatgaatgagaagaaggagattagggtttc |
268 |
Q |
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| T |
22020404 |
attgtgtaaattagctgccgttgggaagcatgaatgagaagaaggagattagggtttc |
22020347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 22036318 - 22036183
Alignment:
| Q |
9 |
agcagagatttcacaggaaggaaagaaagcagttctgtgataatctcatcagggagaactatcggcgatgattccaagctggacggacgctgctgcaact |
108 |
Q |
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| T |
22036318 |
agcagagatttgaccggaaggaaagaaagcagttctgtgataaggtcaagagggaggattatcggtgatgatgccacgttggacggaggctgctgcgact |
22036219 |
T |
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| Q |
109 |
tcggtggtgagagattcatgagagccgtaaattatg |
144 |
Q |
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| T |
22036218 |
tcggtggtgagagattcattagaacggtaaattatg |
22036183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 22039511 - 22039378
Alignment:
| Q |
11 |
cagagatttcacaggaaggaaagaaagcagttctgtgataatctcatcagggagaactatcggcgatgattccaagctggacggacgctgctgcaacttc |
110 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| || | | |||| |||||| | ||||| |
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| T |
22039511 |
cagagatttgaccggaaggaaagaaagcagttctgtgataatctcatcagggaggattatcggcaatgacgccgcatttggcggatgctgcttcgacttc |
22039412 |
T |
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| Q |
111 |
ggtggtgagagattcatgagagccgtaaattatg |
144 |
Q |
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| T |
22039411 |
ggcagtgagagattcatgagagcggtaaattatg |
22039378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 18325444 - 18325377
Alignment:
| Q |
12 |
agagatttcacaggaaggaaagaaagcagttctgtgataatctcatcagggagaactatcggcgatga |
79 |
Q |
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| T |
18325444 |
agagatttcacaggaagataagaaagcacttctgtgataagttcatcggggaggattatcggcgatga |
18325377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 22027870 - 22027830
Alignment:
| Q |
11 |
cagagatttcacaggaaggaaagaaagcagttctgtgataa |
51 |
Q |
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| T |
22027870 |
cagagatttgacgggaagaaaagaaagcagttctgtgataa |
22027830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 3234775 - 3234837
Alignment:
| Q |
17 |
tttcacaggaaggaaagaaagcagttctgtgataatctcatcagggagaactatcggcgatga |
79 |
Q |
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||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |
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| T |
3234775 |
tttcacaggaaggaaagaaagcacttctgtgataagttctacagggaggattatcggcgatga |
3234837 |
T |
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