View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15214_low_1 (Length: 542)
Name: NF15214_low_1
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_low_1 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0214 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 297 - 542
Target Start/End: Original strand, 43922484 - 43922728
Alignment:
| Q |
297 |
aatacccaagcttctccattaaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacct |
396 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43922484 |
aatacccaagcttcttcattaaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatga-ggcagccaccccacct |
43922582 |
T |
|
| Q |
397 |
ttgaggatgccgacaaaaacgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccgga |
496 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
43922583 |
ttgaggatgccgacagaaacacacttactagccccataaccaagaaagaagtgacagccgcccttcactccatgaaatcctacaaagcctctggtccgga |
43922682 |
T |
|
| Q |
497 |
tgagtttcaatgtatcttctttaaatagtattggcatattcttgga |
542 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
43922683 |
tgggtttcaatgtatcttctttaaatagtattggcacattgttgga |
43922728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 43922165 - 43922362
Alignment:
| Q |
17 |
atgaagctactcaatccttccttagcggttgggatgacagtgaagcgagtgagtggattttgttgaattcaataaaacaaag------agagtttgggtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
43922165 |
atgaagctactcaatccttccttagcggttgggatgacagtgaagcgagtgagtggattttgttgaattgaataaaacaaagagaaagagagtttgggtt |
43922264 |
T |
|
| Q |
111 |
ttatttgcacttctccaagtatatcagtttgttcgaaacatgccaaactattatgtttctctcgtctcttttatgatctatctattccattccacatc |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43922265 |
ttatttgcactcctccaagtatatcagtttgttcgaaacatgccaaactattatgtttctctcatctcttttatgatctatctattccattccacatc |
43922362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 316 - 532
Target Start/End: Original strand, 48846322 - 48846529
Alignment:
| Q |
316 |
taaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacctttgaggatgccgacaaaaa |
415 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| |||||||||| | | ||||||||||||| ||| |
|
|
| T |
48846322 |
taaaatatttcaaaaaccttttttgtgggaatcaccat---------aaccatgtcttcgatgaaggaagccaccccagcctagaggatgccgacagaaa |
48846412 |
T |
|
| Q |
416 |
cgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttc |
515 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |||| |||||||||||||||| |
|
|
| T |
48846413 |
cgcactcactagccccataaccaagaaagaagtgacagccgcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttc |
48846512 |
T |
|
| Q |
516 |
tttaaatagtattggca |
532 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
48846513 |
tttaaacagtattggca |
48846529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 316 - 542
Target Start/End: Complemental strand, 1579942 - 1579716
Alignment:
| Q |
316 |
taaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacctttgaggatgccgacaaaaa |
415 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||| | ||||||||||||| ||| |
|
|
| T |
1579942 |
taaaatatttcaaaaaccttttatgtgggaatcaccatcatcaccataaccatgtcttcaatgaatgtatccaccccaccctagaggatgccgacagaaa |
1579843 |
T |
|
| Q |
416 |
cgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttc |
515 |
Q |
| |
|
| || |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
1579842 |
tactctcgctagccccataaccaagaaagaagtgactgccgctcttcactccatgaaaccctacaaagcccctggttcggatgagtttcaatgtatcttc |
1579743 |
T |
|
| Q |
516 |
tttaaatagtattggcatattcttgga |
542 |
Q |
| |
|
|||||| | |||||||| ||| ||||| |
|
|
| T |
1579742 |
tttaaaaaatattggcacattgttgga |
1579716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 542
Target Start/End: Original strand, 8438 - 8560
Alignment:
| Q |
420 |
cttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttcttta |
519 |
Q |
| |
|
|||||||| | | |||| || |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || |||| ||||| ||||| ||||||| |
|
|
| T |
8438 |
cttactaggcccttaacaaaaaaagaagtgacaaccgccctccactccatgaagccctacaaagcccctggccctgatggttttcattgtattttcttta |
8537 |
T |
|
| Q |
520 |
aatagtattggcatattcttgga |
542 |
Q |
| |
|
|| | | |||||| ||| ||||| |
|
|
| T |
8538 |
aacaattttggcacattgttgga |
8560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 498
Target Start/End: Complemental strand, 23133222 - 23133180
Alignment:
| Q |
456 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
498 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
23133222 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
23133180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 498
Target Start/End: Original strand, 11896658 - 11896700
Alignment:
| Q |
456 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
498 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
11896658 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
11896700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 498
Target Start/End: Original strand, 20284359 - 20284401
Alignment:
| Q |
456 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
498 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
20284359 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
20284401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University