View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15214_low_6 (Length: 271)
Name: NF15214_low_6
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 41984566 - 41984374
Alignment:
| Q |
15 |
caaaggggaaccaaccaggagaatgcgttgaaagaaacagtaacggtgttgaattgaatgagaaggaatagtcaaaagactagaagaagggtttaacgct |
114 |
Q |
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| T |
41984566 |
caaaggggaaccaaccaggagaatgcgttgaaagaaacagtaacggtgttgaattgaatgagaaggaataatcaaaagactagaagaagggtttaacgct |
41984467 |
T |
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| Q |
115 |
acacctacaccgtgtttattgctgtgtcagtgtgtgtgcccaccttctttgcaatatgcgcatctgtctatctatcacatcacaacatccaactcttac |
213 |
Q |
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| T |
41984466 |
a------caccgtgtttattgctgtgtcagtgtgtgtgcccaccttctttgcaatatgcgcatctgtctatctatcacatcacaacatccaactcttac |
41984374 |
T |
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