View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15214_low_8 (Length: 262)
Name: NF15214_low_8
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 42789391 - 42789147
Alignment:
| Q |
18 |
gtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactc |
117 |
Q |
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| T |
42789391 |
gtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactc |
42789292 |
T |
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| Q |
118 |
gtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789291 |
gtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatga |
42789192 |
T |
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| Q |
218 |
taaggttgtaacaacagcccgaagaatgtcgagttttaccttgat |
262 |
Q |
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| T |
42789191 |
taaggttgtaacaacagcccgaagaatgtcgagttttaccttgat |
42789147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 42798929 - 42798685
Alignment:
| Q |
18 |
gtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42798929 |
gtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactc |
42798830 |
T |
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| Q |
118 |
gtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatga |
217 |
Q |
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| T |
42798829 |
gtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatga |
42798730 |
T |
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| Q |
218 |
taaggttgtaacaacagcccgaagaatgtcgagttttaccttgat |
262 |
Q |
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| T |
42798729 |
taaggttgtaacaacagcccgaagaatgtcgagttttaccttgat |
42798685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 34567055 - 34566823
Alignment:
| Q |
27 |
aagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgataca |
126 |
Q |
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|||||||| |||||| ||||||||||||||||||| || ||||| || ||| ||| || |||||||||| |||||||| ||| |||||| ||||| |
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| T |
34567055 |
aagaacatacaccttgtctcagacgaaatctactcgggctcagttttctcttcacatgaattcataagcatagccgagattcttgaatctcgtcaataca |
34566956 |
T |
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| Q |
127 |
aagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgt |
226 |
Q |
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|||| || || ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |
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| T |
34566955 |
aagacgcggaaagatgtcacattgtttatagtctttctaaagatctcggtctaccaggtttcagagtcggaacaatttattcctacaacgataaagttgt |
34566856 |
T |
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| Q |
227 |
aacaacagcccgaagaatgtcgagttttacctt |
259 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
34566855 |
tacaacagcacgaagaatgtcgagttttacctt |
34566823 |
T |
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