View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15214_low_9 (Length: 251)
Name: NF15214_low_9
Description: NF15214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15214_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 2700840 - 2700609
Alignment:
| Q |
15 |
aactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaattagannnnnnngttgttattgttgttgttataattaat |
114 |
Q |
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| T |
2700840 |
aactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaattagatttttttgttgttattgttgttgttatatttaat |
2700741 |
T |
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| Q |
115 |
tggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtccttaattagtaaaagatata----gaatgtgtggtgcta |
210 |
Q |
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| T |
2700740 |
tggcaattattagatttgtttagcctaaaaccatagttttgtgatgctaattatgttggtccttaattagtaaaagatatataattaatgtgtggtgcta |
2700641 |
T |
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| Q |
211 |
tacgcttctatgggctatcttcttgtcctatg |
242 |
Q |
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| T |
2700640 |
tactcttgtatgtgctatcttgttgtcctatg |
2700609 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 10843325 - 10843231
Alignment:
| Q |
108 |
aattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtcc-ttaattagtaaaagatatagaatgt |
201 |
Q |
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| T |
10843325 |
aattaattgacagttaatggattagattagcctaaaaccagagatttgtgatgataattatgttggtccacaaattaataaaagatatataatgt |
10843231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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