View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15215_high_10 (Length: 369)
Name: NF15215_high_10
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 46354012 - 46353675
Alignment:
| Q |
16 |
atgaagcatgagagatcatgacaggaaactgacaccccttttctgatggatcctgatctgataagatagccaaacctgaaaaatcacaatcccaatcctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46354012 |
atgaagcatgagagatcatgacaggaaactgacaccccttttctgatggatcctgatctgataagatagccaaacctgaaaaatcacaatcccaatcctt |
46353913 |
T |
|
| Q |
116 |
ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaaccattacaagaagatccatatcctaatgcagtacaatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353912 |
ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaaccattacaagaagatccatatcctaatgcagtacaatct |
46353813 |
T |
|
| Q |
216 |
gataagctacatgcataatcaatactaccagccaaataatgcaaatcactaatatcaggatccaaaatacaccactgtttttccatatacttaacacctt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353812 |
gataagctacatgcataatcaatactaccagccaaataatgcaaatcactaatatcaggatccaaaatacaccactgtttttccatatacttaacacctt |
46353713 |
T |
|
| Q |
316 |
caacagctacaagaccttcatcaccttgaaatcctttt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353712 |
caacagctacaagaccttcatcaccttgaaatcctttt |
46353675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 51490381 - 51490349
Alignment:
| Q |
128 |
ttgataatacatattaaatgcataagaagcatt |
160 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
51490381 |
ttgataatacatattaaatgcatatgaagcatt |
51490349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 22385271 - 22385187
Alignment:
| Q |
81 |
atagccaaacctgaaaaatcacaatcccaatccttctgattatgcacttgataatacatattaaatgcataagaagcattccctt |
165 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| |||| | || ||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
22385271 |
atagccaaaccagagaaatcacagtcccaatccatctggtcattaacttgataatacatattgaaagcatatgaagcattccctt |
22385187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 10251021 - 10251067
Alignment:
| Q |
114 |
ttctgattatgcacttgataatacatattaaatgcataagaagcatt |
160 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10251021 |
ttctgattttgcacttgataatacatattaaatgcatatgaagcatt |
10251067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 2272456 - 2272300
Alignment:
| Q |
81 |
atagccaaacctgaaaaatcacaatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaacca |
179 |
Q |
| |
|
||||||||||| || || || |||| ||||||||| |||||||| ||||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
2272456 |
atagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaag-------------aagactcaaacca |
2272370 |
T |
|
| Q |
180 |
ttacaagaagatccatatcctaatgcagtacaatctgataagctacatgcataatcaatactaccagccaaat |
252 |
Q |
| |
|
||||||||| |||||||| |||| |||||||| |||||| ||||| ||||| |||| | ||||||||||| |
|
|
| T |
2272369 |
ttacaagaa---ccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaat |
2272300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University