View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_high_11 (Length: 358)
Name: NF15215_high_11
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 37092279 - 37091950
Alignment:
| Q |
18 |
ttcatattgttttcaaaatttcacgtcttctttgtagaaatgtttaccaaatgaatnnnnnnnn--ctaacacctgcatgaaaacaattagaacgtgaca |
115 |
Q |
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| T |
37092279 |
ttcatattgttttcaaaatttcacgtcttctttgtagaaatgtttaccaaatgaatgataaaaaaactaacacctgcatgaaaacaattagaacgtgaca |
37092180 |
T |
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| Q |
116 |
aaatatcatcacaattcacaagtttatacatttaatagttgtggaaagtggaaagttagaagaaaaatgaaattaaaacaaaaagtataaactaaccttt |
215 |
Q |
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| T |
37092179 |
aaatatcatcacaattcacaagtttatacatttaataattgtggaaagtggaaagttagaagaaaaatgaaattaaaacataaagtataaactaaccttt |
37092080 |
T |
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| Q |
216 |
cacaattccattgtccaaaccaacttatatgtggatgaatattcagaaggggagttaactcaaacggatgcagataataaacaagttttattaagagaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37092079 |
cacaattccattgtccaaaccaacttatatgtggatgaatattcagaaggggagttaactcaaacggatgcagataataaacaagttttattaagagaag |
37091980 |
T |
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| Q |
316 |
tttaactaacaaattatattttcttgttct |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37091979 |
tttaactaacaaattatattttcttgttct |
37091950 |
T |
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