View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15215_high_13 (Length: 344)

Name: NF15215_high_13
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15215_high_13
NF15215_high_13
[»] chr7 (4 HSPs)
chr7 (38-141)||(10219316-10219419)
chr7 (198-314)||(6925503-6925619)
chr7 (242-314)||(27338360-27338432)
chr7 (138-201)||(10219573-10219636)
[»] chr4 (2 HSPs)
chr4 (198-314)||(500757-500873)
chr4 (198-314)||(35903374-35903491)
[»] chr3 (2 HSPs)
chr3 (198-314)||(2840469-2840585)
chr3 (198-314)||(30832887-30833003)
[»] chr1 (6 HSPs)
chr1 (198-314)||(20375595-20375711)
chr1 (198-314)||(20483992-20484109)
chr1 (198-314)||(13594157-13594277)
chr1 (198-313)||(13675697-13675809)
chr1 (242-314)||(38290010-38290082)
chr1 (243-297)||(28958774-28958828)
[»] scaffold0006 (2 HSPs)
scaffold0006 (198-313)||(179855-179970)
scaffold0006 (198-313)||(173278-173390)
[»] chr5 (1 HSPs)
chr5 (198-314)||(38551346-38551463)
[»] chr2 (2 HSPs)
chr2 (198-314)||(37981106-37981223)
chr2 (243-314)||(4880974-4881045)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 10219316 - 10219419
Alignment:
Q  38 cctcgtcttcaattgcttaatggcgtgaaagttcttgttccagataagtatcgttgtgatttcgttgttcatcaattgttgatggattgcttgataacag 137  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10219316 cctcgtcttcaattgcttaatggcgtgaaagttattgttccagataagtatcgtggtgatttcgttgttcatcaattgttgatggattgcttgataacag 10219415  T
Q  138 aaca 141  Q
    ||||    
T  10219416 aaca 10219419  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 6925619 - 6925503
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6925619 taatcgaacaaatcttctttgtaagatttgcaaattatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 6925520  T
Q  298 gaagttagaatcccctc 314  Q
    |||||||||||||||||    
T  6925519 gaagttagaatcccctc 6925503  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 27338360 - 27338432
Alignment:
Q  242 gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 314  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27338360 gtaattctaatcttttagcatcataaatagttttgttcgaattcaaattgatctctgaagttagaatcccctc 27338432  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 10219573 - 10219636
Alignment:
Q  138 aacacctctgcctcacacaagagtatttttcactatgctgatgtttggtttgatgataggtaat 201  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10219573 aacacctcttcttcacacaagagtatttttcactatgctgatgtttggtttgatgataggtaat 10219636  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 500873 - 500757
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  500873 taatcgaacaaatcttctttgtaagatttgcaaattatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 500774  T
Q  298 gaagttagaatcccctc 314  Q
    |||||||||||||||||    
T  500773 gaagttagaatcccctc 500757  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 35903491 - 35903374
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnn-gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 296  Q
    |||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35903491 taatcgaacaaatcttctttttaagatttgcaaaatattttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 35903392  T
Q  297 tgaagttagaatcccctc 314  Q
    ||||||||||||| ||||    
T  35903391 tgaagttagaatcacctc 35903374  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 2840469 - 2840585
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2840469 taattgaacaaatcttctttgtaagatttgcaaaatatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 2840568  T
Q  298 gaagttagaatcccctc 314  Q
    |||||||||||||||||    
T  2840569 gaagttagaatcccctc 2840585  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 30833003 - 30832887
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30833003 taatcgaacaaatcttctttgtaagatttgcaaaatatttttttgtaattctaatcttttagcatcataagtaattttgttcgaattcaaattgatctct 30832904  T
Q  298 gaagttagaatcccctc 314  Q
    |||||||||||||||||    
T  30832903 gaagttagaatcccctc 30832887  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 20375595 - 20375711
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20375595 taatcgaacaaatcttctttttaagatttgcaaaatatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 20375694  T
Q  298 gaagttagaatcccctc 314  Q
    |||||||||||||||||    
T  20375695 gaagttagaatcccctc 20375711  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 20483992 - 20484109
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnn-gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 296  Q
    |||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20483992 taatcgaacaaatcttctttttaagatttgcaaaatattttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 20484091  T
Q  297 tgaagttagaatcccctc 314  Q
    ||||||||| ||||||||    
T  20484092 tgaagttagtatcccctc 20484109  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 13594157 - 13594277
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnn----gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgat 293  Q
    |||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13594157 taatcgaacaaatcttctatgtaagatttgcaaaatatttttttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgat 13594256  T
Q  294 ctctgaagttagaatcccctc 314  Q
    |||||||||||||||||||||    
T  13594257 ctctgaagttagaatcccctc 13594277  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 13675697 - 13675809
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  13675697 taatcgaacaaatcttctttttaagatttgcaaaatatttttttgtaattctaatcttttagcat---aagtagttttgttcgaattcaaattgatctct 13675793  T
Q  298 gaagttagaatcccct 313  Q
    ||||||||||||||||    
T  13675794 gaagttagaatcccct 13675809  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 38290082 - 38290010
Alignment:
Q  242 gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 314  Q
    |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  38290082 gtaattctaatcttttaatattataagtagttttgttcgaattcaaattgatctctgaaattagaattccctc 38290010  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 28958774 - 28958828
Alignment:
Q  243 taattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28958774 taattctaatcttttagcgtcataagtagttttgttcgaattcaaattgatctct 28958828  T

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Target: scaffold0006 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 179855 - 179970
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  179855 taatcgaacaaatcttctttttaagatttgcaaaatatttttttgtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 179954  T
Q  298 gaagttagaatcccct 313  Q
    ||||||||||||||||    
T  179955 gaagttagaatcccct 179970  T

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Target: scaffold0006; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 173278 - 173390
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctct 297  Q
    |||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  173278 taatcgaacaaatcttctttttaagatttgcaaaatatttttttgtaattctaatcttttagcat---aagtagttttgttcgaattcaaattgatctct 173374  T
Q  298 gaagttagaatcccct 313  Q
    ||||||||||||||||    
T  173375 gaagttagaatcccct 173390  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 38551346 - 38551463
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnn-gtaattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 296  Q
    |||||||||||||||||||||| ||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551346 taatcgaacaaatcttctttgtcagatttgcaaaatattttttttgtaattataatcttttagcatcataagtagttttgttcgaattcaaattgatctc 38551445  T
Q  297 tgaagttagaatcccctc 314  Q
    ||||||||||||||||||    
T  38551446 tgaagttagaatcccctc 38551463  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 37981223 - 37981106
Alignment:
Q  198 taatcgaacaaatcttctttgtaagatttgcaaaatannnnnnngt-aattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctc 296  Q
    |||||||||||||||||||||||||||||||||||||        | |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  37981223 taatcgaacaaatcttctttgtaagatttgcaaaatattttttttttaattttaatcttttagcatcataagtagttttgtttgaattcaaattgatctc 37981124  T
Q  297 tgaagttagaatcccctc 314  Q
    ||||||||||||||||||    
T  37981123 tgaagttagaatcccctc 37981106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 4880974 - 4881045
Alignment:
Q  243 taattctaatcttttagcatcataagtagttttgttcgaattcaaattgatctctgaagttagaatcccctc 314  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4880974 taattataatcttttagcattataagtagttttgttcgaattcaaattgatctctaaagttagaaacccctc 4881045  T

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