View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15215_high_2 (Length: 645)

Name: NF15215_high_2
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15215_high_2
NF15215_high_2
[»] chr8 (5 HSPs)
chr8 (326-626)||(30665729-30666029)
chr8 (1-278)||(30666044-30666321)
chr8 (234-286)||(2373280-2373332)
chr8 (244-288)||(16233704-16233748)
chr8 (241-273)||(29968386-29968418)
[»] chr5 (4 HSPs)
chr5 (225-491)||(29822121-29822388)
chr5 (226-278)||(19005820-19005872)
chr5 (242-286)||(20869238-20869282)
chr5 (229-273)||(39573787-39573831)
[»] chr4 (7 HSPs)
chr4 (362-431)||(28114903-28114972)
chr4 (225-273)||(10758746-10758794)
chr4 (357-444)||(48905690-48905777)
chr4 (436-498)||(9759868-9759930)
chr4 (436-498)||(16964813-16964875)
chr4 (229-270)||(50073560-50073601)
chr4 (229-273)||(1186666-1186710)
[»] chr6 (2 HSPs)
chr6 (225-270)||(18021735-18021780)
chr6 (225-273)||(4002794-4002842)
[»] chr3 (2 HSPs)
chr3 (225-269)||(31214508-31214552)
chr3 (241-273)||(46719961-46719993)
[»] scaffold0002 (1 HSPs)
scaffold0002 (398-475)||(15658-15736)
[»] chr7 (2 HSPs)
chr7 (398-496)||(20228290-20228387)
chr7 (241-286)||(47113365-47113410)
[»] scaffold0302 (1 HSPs)
scaffold0302 (241-273)||(17490-17522)
[»] chr1 (1 HSPs)
chr1 (229-269)||(30928629-30928669)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 326 - 626
Target Start/End: Complemental strand, 30666029 - 30665729
Alignment:
Q  326 tttgctaagaagacgccacatatctcaaaacagggtccaaaattgctgtttcttaaagataaggggtaaaaattgcaacattttgtaaagttaggggaca 425  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30666029 tttgctaagaagacaccacatatctcaaaacagggtccaaagttgctgtttcttaaagataaggggtaaaaattgcaatattttgtaaagttaggggaca 30665930  T
Q  426 aaattgttaatttttgttaggggtcagaatcgcaacttttgaaaagttaaagagtaaaaaatgcatataagccaaagataaattaaattcaaatggctat 525  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30665929 aaattgttattttttgttaggggtcaaaatcgcaacttttaaaaagttaaagagtaaaaaatgcatataagccaaagataaattaaattcaaatggcttt 30665830  T
Q  526 catgtaaactataaacattcataagagctcatagaataaatacaacaacaacgaagaaataagtttaaaaactaatattgacattctatacgcatcactc 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30665829 catgtaaactataaacattcataagagctcatagaataaatacaacaacaacgaagaaataagtttaaaaactaatattgacattctatacgcatcactc 30665730  T
Q  626 a 626  Q
    |    
T  30665729 a 30665729  T

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Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30666321 - 30666044
Alignment:
Q  1 ccaataaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcgacaaaatgaagtgac 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  30666321 ccaacaaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcgaaaaaatcaagtgac 30666222  T
Q  101 acactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacattcaaaatataagagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30666221 acactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacattcaaaatataagagct 30666122  T
Q  201 tatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30666121 tatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgtgattttggcccaccaa 30666044  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 2373280 - 2373332
Alignment:
Q  234 ttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 286  Q
    |||||| ||||||||||||||||| ||| ||||||||||| | ||||| ||||    
T  2373280 ttttggccccttaacttttaaaaagttgtgattttggccccctaacaaaaaaa 2373332  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 16233748 - 16233704
Alignment:
Q  244 ttaacttttaaaaacttgcgattttggcccaccaacaagaaaata 288  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||    
T  16233748 ttaacttttaaaaagttgcgattttggccccctaacaaaaaaata 16233704  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 29968418 - 29968386
Alignment:
Q  241 cccttaacttttaaaaacttgcgattttggccc 273  Q
    |||||||||||||||||||||| ||||||||||    
T  29968418 cccttaacttttaaaaacttgcaattttggccc 29968386  T

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Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 225 - 491
Target Start/End: Complemental strand, 29822388 - 29822121
Alignment:
Q  225 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaatagcaatcttggcccccaacttaaagataaggggccaa 324  Q
    |||||||||||||| |||  ||| ||||||| |||| ||||||| |||| ||||||| |||||| |||| ||||||||  ||||||||||||| ||||||    
T  29822388 taaatgcacttttgatcctctaatttttaaagacttacgattttagccc-ccaacaataaaataacaattttggcccctgacttaaagataagaggccaa 29822290  T
Q  325 atttgctaagaagacgccacatatctcaaaac--agggtccaaaattgctgtttcttaaagataaggggtaaaaattgcaacattttgtaaagttagggg 422  Q
    | ||| | |||||||||||||| ||||||| |   |||  |  ||||| | ||| |||||||||||||  ||||| ||||||||||||||| ||||||||    
T  29822289 aattgttgagaagacgccacatgtctcaaagcgtgggggtcggaattgttattttttaaagataagggacaaaaagtgcaacattttgtaatgttagggg 29822190  T
Q  423 acaaaattgttaatttttgttagg-ggtcagaatcgcaacttttgaaaagttaaagagtaaaaaatgcat 491  Q
     ||||||| ||| ||||||||||| ||||| ||||| ||||||||||||||||  |||| |||| |||||    
T  29822189 -caaaatttttattttttgttaggaggtcaaaatcgtaacttttgaaaagttatggagtcaaaagtgcat 29822121  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 19005872 - 19005820
Alignment:
Q  226 aaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 278  Q
    ||||||||||||||||||  || ||| | ||||||||||||||||||| ||||    
T  19005872 aaatgcacttttggtccccaaagtttcacaaacttgcgattttggccccccaa 19005820  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 20869282 - 20869238
Alignment:
Q  242 ccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 286  Q
    ||||||||||||||||  |||||||||||||||| ||||| ||||    
T  20869282 ccttaacttttaaaaagatgcgattttggcccactaacaaaaaaa 20869238  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 39573831 - 39573787
Alignment:
Q  229 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 273  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||    
T  39573831 tgcacttttggtcccctatctttttaaaagttgcgattttggccc 39573787  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 28114903 - 28114972
Alignment:
Q  362 ccaaaattgctgtttcttaaagataaggggtaaaaattgcaacattttgtaaagttaggggacaaaattg 431  Q
    ||||||||| | ||| |||||| |||| ||  ||||| ||||||||||||||||||||||||||||||||    
T  28114903 ccaaaattgttattttttaaagttaagaggcgaaaatagcaacattttgtaaagttaggggacaaaattg 28114972  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 10758794 - 10758746
Alignment:
Q  225 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 273  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  10758794 taaatacacttttggccccttaacttttaaaaagttgcgattttggccc 10758746  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 48905690 - 48905777
Alignment:
Q  357 agggtccaaaattgctgtttcttaaagataaggggtaaaaattgcaacattttgtaaagttaggggacaaaattgttaatttttgtta 444  Q
    |||| ||| ||||||| ||| |||||||||| ||| ||||||| |||  |||||||||||||| ||   ||||||||| |||||||||    
T  48905690 aggggccataattgctattttttaaagataaagggcaaaaattacaatgttttgtaaagttagagggtgaaattgttattttttgtta 48905777  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 9759930 - 9759868
Alignment:
Q  436 tttttgttaggggtcagaatcgcaacttttgaaaagttaaagagtaaaaaatgcatataagcc 498  Q
    ||||||| |||||||  ||||||||||||| |||||| || |||| |||||||||| ||||||    
T  9759930 tttttgtcaggggtccaaatcgcaactttttaaaagtaaatgagttaaaaatgcatttaagcc 9759868  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 16964813 - 16964875
Alignment:
Q  436 tttttgttaggggtcagaatcgcaacttttgaaaagttaaagagtaaaaaatgcatataagcc 498  Q
    ||||||||||||| || ||||||||||||| ||||||||||| || | ||||| || ||||||    
T  16964813 tttttgttaggggccaaaatcgcaactttttaaaagttaaagggtcacaaatgtatttaagcc 16964875  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 50073601 - 50073560
Alignment:
Q  229 tgcacttttggtcccttaacttttaaaaacttgcgattttgg 270  Q
    |||||||||||||||||| ||||| |||| ||||||||||||    
T  50073601 tgcacttttggtcccttatctttttaaaagttgcgattttgg 50073560  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 1186666 - 1186710
Alignment:
Q  229 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 273  Q
    ||||||||||| ||| |||||||| |||| |||||||||||||||    
T  1186666 tgcacttttggccccctaactttttaaaagttgcgattttggccc 1186710  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 18021735 - 18021780
Alignment:
Q  225 taaatgcacttttggtcccttaacttttaaaaacttgcgattttgg 270  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  18021735 taaatgcacttttggtcccttaagttttcaaaacttgcaattttgg 18021780  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 4002794 - 4002842
Alignment:
Q  225 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 273  Q
    |||||||||||||||  || |||||| |||||||||| |||||||||||    
T  4002794 taaatgcacttttggatccctaacttctaaaaacttgagattttggccc 4002842  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 31214552 - 31214508
Alignment:
Q  225 taaatgcacttttggtcccttaacttttaaaaacttgcgattttg 269  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  31214552 taaatgcattttaggtcccttaacttttaaaaacttgcaattttg 31214508  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 46719961 - 46719993
Alignment:
Q  241 cccttaacttttaaaaacttgcgattttggccc 273  Q
    ||||||||||||||||| |||||||||||||||    
T  46719961 cccttaacttttaaaaagttgcgattttggccc 46719993  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 15658 - 15736
Alignment:
Q  398 ttgcaacattttgtaaagttaggggacaaaattgtta-atttttgttaggggtcagaatcgcaacttttgaaaagttaa 475  Q
    |||||||||||| |||||||| |||  |||||||||| |||||| |  ||||||| ||| ||||||||| |||||||||    
T  15658 ttgcaacattttataaagttaaggggtaaaattgttatatttttttagggggtcaaaattgcaactttttaaaagttaa 15736  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 496
Target Start/End: Original strand, 20228290 - 20228387
Alignment:
Q  398 ttgcaacattttgtaaagttaggggacaaaattgttaatttttgttaggggtcagaatcgcaacttttgaaaagttaaagagtaaaaaatgcatataag 496  Q
    ||||||| ||||||||||||| || | |||||||| | ||||| |||| ||||| || || ||||||| |||| |||| |||| |||||||||| ||||    
T  20228290 ttgcaacgttttgtaaagtta-ggaataaaattgtaacttttttttagaggtcaaaaccgtaactttttaaaaattaatgagtcaaaaatgcatttaag 20228387  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 47113410 - 47113365
Alignment:
Q  241 cccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 286  Q
    ||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  47113410 cccttaacttttaaaaagttgcgattttggccccctaacaaaaaaa 47113365  T

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Target: scaffold0302 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 17490 - 17522
Alignment:
Q  241 cccttaacttttaaaaacttgcgattttggccc 273  Q
    |||||||||||||||||||||| ||||||||||    
T  17490 cccttaacttttaaaaacttgcaattttggccc 17522  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 30928669 - 30928629
Alignment:
Q  229 tgcacttttggtcccttaacttttaaaaacttgcgattttg 269  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  30928669 tgcacctttgatcccttaacttttaaaaagttgcgattttg 30928629  T

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