View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15215_high_4 (Length: 524)

Name: NF15215_high_4
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15215_high_4
NF15215_high_4
[»] chr1 (22 HSPs)
chr1 (33-279)||(32213639-32213887)
chr1 (385-506)||(32213985-32214106)
chr1 (365-429)||(22346321-22346385)
chr1 (364-416)||(24140744-24140796)
chr1 (364-429)||(27209804-27209869)
chr1 (365-418)||(4940824-4940877)
chr1 (364-407)||(34874547-34874590)
chr1 (364-406)||(33929947-33929989)
chr1 (365-415)||(41147562-41147612)
chr1 (368-417)||(8244067-8244116)
chr1 (364-425)||(43433737-43433798)
chr1 (364-409)||(49901904-49901949)
chr1 (364-436)||(6170634-6170706)
chr1 (365-429)||(47895292-47895356)
chr1 (364-416)||(50154444-50154496)
chr1 (366-429)||(7190560-7190623)
chr1 (364-415)||(11385953-11386004)
chr1 (365-407)||(29966802-29966844)
chr1 (364-405)||(47655454-47655495)
chr1 (365-425)||(49508817-49508877)
chr1 (366-407)||(9055897-9055938)
chr1 (368-416)||(52396414-52396462)
[»] chr4 (24 HSPs)
chr4 (364-429)||(45688701-45688766)
chr4 (364-429)||(47188751-47188816)
chr4 (364-429)||(2362587-2362652)
chr4 (365-430)||(9693558-9693623)
chr4 (364-429)||(23765536-23765601)
chr4 (365-429)||(30475383-30475447)
chr4 (365-427)||(34316810-34316872)
chr4 (364-418)||(35808482-35808536)
chr4 (364-425)||(33951662-33951723)
chr4 (364-426)||(41956299-41956361)
chr4 (364-426)||(55669700-55669762)
chr4 (364-412)||(50514699-50514747)
chr4 (365-412)||(19329015-19329062)
chr4 (365-407)||(31754918-31754960)
chr4 (364-417)||(10100199-10100252)
chr4 (368-429)||(54339071-54339132)
chr4 (365-429)||(26040447-26040511)
chr4 (364-412)||(53567039-53567087)
chr4 (364-414)||(31168107-31168157)
chr4 (364-445)||(26831872-26831952)
chr4 (365-418)||(40436050-40436103)
chr4 (366-415)||(45088042-45088091)
chr4 (371-415)||(27839399-27839443)
chr4 (364-416)||(51266895-51266947)
[»] chr7 (11 HSPs)
chr7 (364-429)||(29687434-29687499)
chr7 (364-407)||(24359794-24359837)
chr7 (364-418)||(29034656-29034710)
chr7 (364-429)||(1910202-1910267)
chr7 (368-429)||(5240422-5240483)
chr7 (366-406)||(5348057-5348097)
chr7 (364-416)||(8380412-8380464)
chr7 (364-413)||(7323039-7323088)
chr7 (364-429)||(8292703-8292768)
chr7 (364-412)||(22521561-22521609)
chr7 (365-407)||(27053580-27053622)
[»] chr5 (12 HSPs)
chr5 (364-429)||(16315618-16315683)
chr5 (364-429)||(35653341-35653406)
chr5 (365-429)||(39567861-39567925)
chr5 (364-415)||(13951322-13951373)
chr5 (364-441)||(5151435-5151512)
chr5 (365-426)||(12914136-12914197)
chr5 (365-429)||(3639161-3639225)
chr5 (365-407)||(4838261-4838303)
chr5 (364-425)||(34546740-34546801)
chr5 (371-426)||(8410103-8410158)
chr5 (367-413)||(25017380-25017426)
chr5 (364-416)||(4422050-4422102)
[»] chr2 (17 HSPs)
chr2 (364-429)||(6999160-6999225)
chr2 (364-416)||(17056143-17056195)
chr2 (364-416)||(17068590-17068642)
chr2 (364-416)||(17074573-17074625)
chr2 (365-416)||(862560-862611)
chr2 (364-423)||(17118458-17118517)
chr2 (364-418)||(2966509-2966563)
chr2 (365-415)||(39401621-39401671)
chr2 (364-417)||(17095152-17095205)
chr2 (364-416)||(27495094-27495146)
chr2 (364-416)||(41436449-41436501)
chr2 (364-429)||(1321125-1321191)
chr2 (364-413)||(11445405-11445454)
chr2 (364-417)||(16361536-16361589)
chr2 (364-429)||(39085878-39085943)
chr2 (365-412)||(44299768-44299815)
chr2 (372-425)||(9201588-9201641)
[»] chr8 (8 HSPs)
chr8 (364-429)||(3174414-3174479)
chr8 (366-429)||(4989894-4989957)
chr8 (364-412)||(44874308-44874356)
chr8 (364-405)||(34714007-34714048)
chr8 (364-418)||(10694776-10694830)
chr8 (364-406)||(21016143-21016185)
chr8 (365-426)||(6433505-6433566)
chr8 (375-416)||(39972249-39972290)
[»] chr3 (17 HSPs)
chr3 (364-429)||(44570472-44570537)
chr3 (364-416)||(36730239-36730291)
chr3 (364-418)||(12051007-12051061)
chr3 (364-406)||(10854840-10854882)
chr3 (365-414)||(25102408-25102457)
chr3 (364-429)||(46317445-46317509)
chr3 (365-429)||(51817399-51817463)
chr3 (364-407)||(8715587-8715630)
chr3 (364-407)||(9067474-9067517)
chr3 (364-406)||(4759936-4759978)
chr3 (364-406)||(12905368-12905410)
chr3 (368-418)||(31647273-31647323)
chr3 (364-414)||(32415542-32415592)
chr3 (372-419)||(13350823-13350870)
chr3 (367-406)||(29915664-29915703)
chr3 (367-406)||(29964817-29964856)
chr3 (368-416)||(35306303-35306351)
[»] chr6 (8 HSPs)
chr6 (365-429)||(26572164-26572228)
chr6 (365-429)||(7875268-7875332)
chr6 (365-429)||(16437669-16437733)
chr6 (364-415)||(32786041-32786092)
chr6 (365-416)||(5578245-5578296)
chr6 (364-414)||(12191466-12191516)
chr6 (364-425)||(8324190-8324251)
chr6 (365-429)||(7880514-7880578)
[»] scaffold0062 (3 HSPs)
scaffold0062 (365-415)||(16858-16908)
scaffold0062 (365-415)||(27026-27076)
scaffold0062 (365-415)||(37192-37242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (364-408)||(392218-392262)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 279
Target Start/End: Original strand, 32213639 - 32213887
Alignment:
Q  33 acttattagcattttcctaaaatatattatgctggtgaaggtgtattgtcaagagagaaagaagaaaaaac-gactattggtccctagactcaaaaacaa 131  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32213639 acttgttagcaatttcctaaaatatattatgctggtgaaggtgtattgtcaagagagaaagaagaaaaaaaagactattggtccctagactcaaaaacaa 32213738  T
Q  132 aataattgaactcaccaacccat-ttatccggtatccatcccttcatatagcttatgggctgttgatttcaagataaagttttatcagtggtcatgactt 230  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32213739 aataattgaattcaccaacccatattatccggtatacatcccttcatatagcttatgggctgttgatttcaagataaagttttattagtggtcgtgactt 32213838  T
Q  231 gctaacaatctcttaaaaattaaaggagaatgctaattattgcccttgg 279  Q
    ||||||||||||||||||||||||||||||| ||||  ||||| |||||    
T  32213839 gctaacaatctcttaaaaattaaaggagaatactaaccattgctcttgg 32213887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 506
Target Start/End: Original strand, 32213985 - 32214106
Alignment:
Q  385 atgctatttttggcttccttaactattgccctgaaggcaatggttggtaagatccaaaattaaattagaataaaggagaagaaatttttaatattatctc 484  Q
    |||||| |||| ||||||| ||| ||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32213985 atgctacttttcgcttcctaaaccattactctgaaggcaatggttagtaagacccaaaattaaattagaataaaggagaaggaatttttaatattatctc 32214084  T
Q  485 aattaatgttaagaaaagacat 506  Q
    ||||||||||||||||||||||    
T  32214085 aattaatgttaagaaaagacat 32214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 22346321 - 22346385
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||||    
T  22346321 ttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcctcaaggcaatggtt 22346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 24140796 - 24140744
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24140796 gttgttgaaaccaatgcaaacatgctatttttggcttccttaaccattgccct 24140744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 27209804 - 27209869
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| | ||||||||||    
T  27209804 gttgttgaaaccaatgcaaacatcctacttttggcttccttaaccattgccctcagggcaatggtt 27209869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 4940824 - 4940877
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  4940824 ttgttaaaaccaatacaaacatgctatttttggtttccttaactattgccctga 4940877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 34874590 - 34874547
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  34874590 gttgttgaaaccaatgcaaacatgctacttttggcttccttaac 34874547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 33929989 - 33929947
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  33929989 gttgttgaaaccaatgcaaacatgctacttttggcttccttaa 33929947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 41147562 - 41147612
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  41147562 ttgttgaaaccaatgcaaacatgctacttttgacttccttaaccattgccc 41147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 8244116 - 8244067
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctg 417  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  8244116 ttgaaaccaatggaaacatgttatttttggcttccttaaccattgccctg 8244067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 43433798 - 43433737
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||||    
T  43433798 gttgttgaaaccaatacaaacatactacttttggcttccttaaccattaccctcaaggcaat 43433737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 49901949 - 49901904
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaacta 409  Q
    |||||||||||||||||||||||| || ||||||||||||||||||    
T  49901949 gttgttgaaaccaatgcaaacatgatacttttggcttccttaacta 49901904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 436
Target Start/End: Original strand, 6170634 - 6170706
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggttggtaaga 436  Q
    |||||||||||||||||||||||| || ||||| |||||||||| |||||| | | |||||||| | ||||||    
T  6170634 gttgttgaaaccaatgcaaacatgttacttttgacttccttaaccattgccttaagggcaatggatagtaaga 6170706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 47895356 - 47895292
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| |||||||||||| || |||||||||||||||| ||||| |||| | ||||||||    
T  47895356 ttgttgaaactaatgcaaacatgttacttttggcttccttaaccattgctctgaggacaatggtt 47895292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 50154496 - 50154444
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| ||||    
T  50154496 gttgttgaaaccaatgcaaacatgttacttttggcttccttaaccattaccct 50154444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 7190560 - 7190623
Alignment:
Q  366 tgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| |||| ||| | ||||||||||    
T  7190560 tgttgaaactaatgcaaacatgctacttttagcttccttaaccattgtcctaagggcaatggtt 7190623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 11386004 - 11385953
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    ||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  11386004 gttgttgaaaccaatgcaaacatgctacttttggttttcttaaccattgccc 11385953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 29966844 - 29966802
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  29966844 ttgttgaaaccaatgcaaacatgctacttttgacttccttaac 29966802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 47655454 - 47655495
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttcctta 405  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  47655454 gttgttgaaaccaatgcaaacatgctacttttgccttcctta 47655495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 49508817 - 49508877
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    |||| ||||||||||||||||||||| |||||||||| ||||| |||| | ||| ||||||    
T  49508817 ttgtcgaaaccaatgcaaacatgctacttttggcttctttaaccattgtcttgagggcaat 49508877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 9055897 - 9055938
Alignment:
Q  366 tgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    |||||| || ||||||||||||||| ||||||||||||||||    
T  9055897 tgttgagactaatgcaaacatgctacttttggcttccttaac 9055938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 52396462 - 52396414
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    ||||||| ||||||||||||||||||||   ||||||||| ||||||||    
T  52396462 ttgaaacaaatgcaaacatgctatttttaatttccttaaccattgccct 52396414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 45688766 - 45688701
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  45688766 gttgttgaaactaatgcaaacatgctacttttggcttccttaactattgccctgaatgcaatggtt 45688701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 47188751 - 47188816
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  47188751 gttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccctgatggcaatggtt 47188816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 2362652 - 2362587
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||| |||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||    
T  2362652 gttgttaaaaccaatgcaaacatactacttttgacttccttaaccattgccctgaaggcaatggtt 2362587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 9693558 - 9693623
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggttg 430  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| |||| | |||||||||    
T  9693558 ttgttgaaaccaatgcaaacatgctatttttgacttccttaaccattgctctgaggacaatggttg 9693623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 23765601 - 23765536
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||| ||||| ||||||||||    
T  23765601 gttgttgaaaccaatgcaaacatgctacttttagcttccttaacaattgtcctgagggcaatggtt 23765536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 30475447 - 30475383
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||| |||| ||||||||||    
T  30475447 ttgttgaaaccaatgcaaacatattacttttggcttccttaactattgctctgagggcaatggtt 30475383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 34316810 - 34316872
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatgg 427  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| || || ||||||||    
T  34316810 ttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcccgagggcaatgg 34316872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 35808482 - 35808536
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  35808482 gttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcctga 35808536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 33951723 - 33951662
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    ||||||||||||||| |||||||| || |||||||||||||||| |||||||||| ||||||    
T  33951723 gttgttgaaaccaatacaaacatgttaattttggcttccttaaccattgccctgagggcaat 33951662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 41956299 - 41956361
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatg 426  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||| ||||| |||| |||||||    
T  41956299 gttgttgaagccaatgcaaacatgctacttttgccttccttaaccattgctctgagggcaatg 41956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 55669762 - 55669700
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatg 426  Q
    |||||| ||| |||||||||||||||| |||||||||||||||| |||||||| | |||||||    
T  55669762 gttgttaaaaacaatgcaaacatgctacttttggcttccttaaccattgccctcagggcaatg 55669700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 50514699 - 50514747
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  50514699 gttgttgaaaccaatgcaaacatgctacttttggtttccttaaccattg 50514747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 19329015 - 19329062
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    |||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  19329015 ttgttgaaaccaatgcaaacatgctacttttgccttccttaaccattg 19329062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 31754960 - 31754918
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  31754960 ttgttgaaaccaatgcaaacatgctacttttgacttccttaac 31754918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 10100199 - 10100252
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctg 417  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||| ||||    
T  10100199 gttgttgaaaccaatgcaaacatgttacttttggctttcttaaccattgtcctg 10100252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 54339132 - 54339071
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||| ||| |||||| ||||| |||||||||| ||||| |||| ||||||||||    
T  54339132 ttgaaaccaatgtaaatatgctacttttgacttccttaaccattgctctgagggcaatggtt 54339071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 26040447 - 26040511
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||| |||||||||| |||||| |||||||||||||||| | ||| |||| | ||||||||    
T  26040447 ttgttgaagccaatgcaaatatgctacttttggcttccttaaccactgctctgaggacaatggtt 26040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 53567039 - 53567087
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    |||||||||||  |||||||||||||| ||||| |||||||||||||||    
T  53567039 gttgttgaaactcatgcaaacatgctacttttgacttccttaactattg 53567087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 31168157 - 31168107
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgcc 414  Q
    |||||||||||||||| |||||| ||| |||||||||| ||||| ||||||    
T  31168157 gttgttgaaaccaatgtaaacattctacttttggcttctttaaccattgcc 31168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 26831872 - 26831952
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggttggtaagatccaaaatt 445  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||||| ||||||  || || ||||||| | |||| ||||||||    
T  26831872 gttgttgaaac-aatgcaaacatgctacttttgacttctttaacgattgccacgagggtaatggttagcaagacccaaaatt 26831952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 40436103 - 40436050
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    ||||||||||||| |||||||||||| |||||| || |||||| |||| |||||    
T  40436103 ttgttgaaaccaaagcaaacatgctacttttggttttcttaaccattgtcctga 40436050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 45088091 - 45088042
Alignment:
Q  366 tgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||| |||||||||||| ||| |||||| ||||||||| |||||||    
T  45088091 tgttgaaatcaatgcaaacatactacttttggtttccttaaccattgccc 45088042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 27839399 - 27839443
Alignment:
Q  371 aaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||||||||||||||| | |||||||  |||||||    
T  27839399 aaaccaatgcaaacatgctatttttgacctccttaatcattgccc 27839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 51266947 - 51266895
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||| |||| ||||||||||| ||||| |||||||||  ||||||||    
T  51266947 gttgttgaaatcaatacaaacatgctacttttgacttccttaatcattgccct 51266895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 29687499 - 29687434
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||    
T  29687499 gttgttgaaaccaatgcaaacatgctacttttggcttccttaagtattgccttgagggcaatggtt 29687434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 24359794 - 24359837
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24359794 gttgttgaaaccaatgcaaacatgctacttttggcttccttaac 24359837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 29034710 - 29034656
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||    
T  29034710 gttgttgaaactaatgcaaacatgctacttttggctttcttaaccattgccctga 29034656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 1910267 - 1910202
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||| |||| |||||||||| ||||| |||| ||||| |||||||||| ||||||||||    
T  1910267 gttgttgaaacaaatgtaaacatgctacttttgacttctttaaccattgccctgatggcaatggtt 1910202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 5240422 - 5240483
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| | | |||||| |||||    
T  5240422 ttgaaaccaatgcaaacatgctacttttggcttccttaaccattgtcttaaaggcattggtt 5240483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 5348057 - 5348097
Alignment:
Q  366 tgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5348057 tgttgaaaccaatgcaaacatgctacttttggcttccttaa 5348097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 8380464 - 8380412
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||| |||||| ||| |||||||||||||||| ||||||||    
T  8380464 gttgttgaaaccaatgaaaacatactacttttggcttccttaaccattgccct 8380412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 7323039 - 7323088
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgc 413  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||| |||||    
T  7323039 gttgttgaaaccaatgcaaacatgctacttttgacttctttaaccattgc 7323088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 8292768 - 8292703
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| |||| ||||||||||| ||||| |||||||||| |||||||| | | ||||||||    
T  8292768 gttgttgaaatcaatccaaacatgctacttttgacttccttaaccattgccctcacgacaatggtt 8292703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 22521609 - 22521561
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||| ||||    
T  22521609 gttgttgaaaccaatgcaaacatgctacttttgactttcttaaccattg 22521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 27053580 - 27053622
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    |||||||||||||||||||||| ||| |||||| |||||||||    
T  27053580 ttgttgaaaccaatgcaaacattctacttttggtttccttaac 27053622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 16315618 - 16315683
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||    
T  16315618 gttgttgaaaccaatgcaaacacgctacttttggcttccttaaccattgccctgagggcaatggtt 16315683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 35653341 - 35653406
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||    
T  35653341 gttgttgaaaccaatgcaaacatggtacttttggcttccttaaccattgccctgagggcaatggtt 35653406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 39567925 - 39567861
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||    
T  39567925 ttgttgaaaccaatgcaaacatgctacttttgacttccttaatcattgccctgagggcaatggtt 39567861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 13951322 - 13951373
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  13951322 gttgttgaaaccaatgcaagcatgctacttttggcttccttaaccattgccc 13951373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 441
Target Start/End: Complemental strand, 5151512 - 5151435
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggttggtaagatccaa 441  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||  ||| |||||  ||||||||| |||||| ||||    
T  5151512 gttgttgaaactaatgcaaacatgctacttttgccttccttaaccgttgtcctgagagcaatggttagtaagacccaa 5151435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 12914197 - 12914136
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatg 426  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||| |||| | |||||||    
T  12914197 ttgttgaaaccaatgcaaacatactacttttggcttccttaaccattaccctcagggcaatg 12914136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 3639161 - 3639225
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||  || ||||| |||||||||| |||  ||||||||||||||||    
T  3639161 ttgttgaaaccaatgcaaacatattacttttgacttccttaaccattatcctgaaggcaatggtt 3639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 4838303 - 4838261
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  4838303 ttgttgaaactaatgcaaacatgttatttttggcttccttaac 4838261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 34546801 - 34546740
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    ||||||||||| |||||||| ||| || |||||||||||||||| |||||||| | ||||||    
T  34546801 gttgttgaaactaatgcaaaaatgatacttttggcttccttaaccattgcccttagggcaat 34546740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 426
Target Start/End: Complemental strand, 8410158 - 8410103
Alignment:
Q  371 aaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatg 426  Q
    |||||||| ||||||||||| |||||||||||||||  |||||| ||| |||||||    
T  8410158 aaaccaatacaaacatgctagttttggcttccttaatcattgccttgagggcaatg 8410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 25017380 - 25017426
Alignment:
Q  367 gttgaaaccaatgcaaacatgctatttttggcttccttaactattgc 413  Q
    |||||||||||| ||||||||||| ||||| |||||||||| |||||    
T  25017380 gttgaaaccaatacaaacatgctacttttgacttccttaaccattgc 25017426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 4422050 - 4422102
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||  ||||||||||||| || ||||| |||||||||| ||||||||    
T  4422050 gttgttgaagtcaatgcaaacatgttacttttgacttccttaaccattgccct 4422102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 6999225 - 6999160
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||    
T  6999225 gttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccctgaggacaatggtt 6999160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 17056143 - 17056195
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  17056143 gttgttgaaaccaatgcaaatatgctatttttggcttccttaaccattgccct 17056195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 17068590 - 17068642
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  17068590 gttgttgaaaccaatgcaaatatgctatttttggcttccttaaccattgccct 17068642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 17074573 - 17074625
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  17074573 gttgttgaaactaatgcaaatatgctatttttggcttccttaaccattgccct 17074625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 862611 - 862560
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  862611 ttgttgaaaccaatgcaaacatgctacttttggcttccttaatcattgccct 862560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 17118458 - 17118517
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggca 423  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| |||| ||| ||||||    
T  17118458 gttgttgaaaccaatgcaaatatgttatttttggcttccttaaccattgtcctcaaggca 17118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 2966563 - 2966509
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    |||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||    
T  2966563 gttgttgaaaccaatgcaaatatgctacttttagcttccttaaccattgccctga 2966509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 39401621 - 39401671
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  39401621 ttgttgaaaccaatacaaacatgctacttttggcttccttaaccattgccc 39401671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 17095152 - 17095205
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctg 417  Q
    |||||||||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  17095152 gttgttgaaaccaatgcaaatatgctatttttgcattccttaaccattgccctg 17095205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 27495146 - 27495094
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  27495146 gttgttgaaaccaatgcaaacatactacttttgacttccttaaccattgccct 27495094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 41436501 - 41436449
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  41436501 gttgttgaaaccaatgcaaacatgctacttttgacttcattaaccattgccct 41436449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 1321191 - 1321125
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa-ctattgccctgaaggcaatggtt 429  Q
    |||||||||| ||||| ||||||||||  |||||||||||||| | |||||||||| ||||||||||    
T  1321191 gttgttgaaatcaatgtaaacatgctaactttggcttccttaacccattgccctgagggcaatggtt 1321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 11445405 - 11445454
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgc 413  Q
    |||||||||||||||||||||||| || |||||| ||||||||| |||||    
T  11445405 gttgttgaaaccaatgcaaacatgttacttttggtttccttaaccattgc 11445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 16361589 - 16361536
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctg 417  Q
    ||||| |||||||||||||||||| || |||||||||||||||  |||||||||    
T  16361589 gttgtcgaaaccaatgcaaacatgttacttttggcttccttaatcattgccctg 16361536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 39085878 - 39085943
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| |||||||||||||||  ||||| |||||||||| ||||| |||| | ||||||||    
T  39085878 gttgttgaaatcaatgcaaacatgctgcttttgacttccttaaccattgctctgaggacaatggtt 39085943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 44299768 - 44299815
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||||    
T  44299768 ttgttgaaaccaatgtaagcatactatttttggcttccttaaccattg 44299815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 9201588 - 9201641
Alignment:
Q  372 aaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    ||||||| |||||||| || ||||| |||| |||||||||||||||| ||||||    
T  9201588 aaccaatacaaacatgttacttttgacttctttaactattgccctgagggcaat 9201641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 3174479 - 3174414
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||    
T  3174479 gttgttgaaaccaatacaaacatgctacttttggcttccttaactgttgccatgagggcaatggtt 3174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 4989957 - 4989894
Alignment:
Q  366 tgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| ||||||||||    
T  4989957 tgttgaaaccaatgcaaacatgctacttttgacttccttaaccattgccatgagggcaatggtt 4989894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 44874356 - 44874308
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattg 412  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  44874356 gttgttgaaaccaatgcaaacatgctacttttgtcttccttaaccattg 44874308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 34714007 - 34714048
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttcctta 405  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  34714007 gttgttgaaaccaatgcaaacatgctacttttgacttcctta 34714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 10694830 - 10694776
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    |||||||||| ||||||||| ||| || |||||||||||||||| ||||| ||||    
T  10694830 gttgttgaaatcaatgcaaatatgatacttttggcttccttaaccattgctctga 10694776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 21016143 - 21016185
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||    
T  21016143 gttgttgaagccaatgcaaacatgctacttttgacttccttaa 21016185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 6433566 - 6433505
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatg 426  Q
    ||||| ||||||||||||| || ||| ||||| |||||||||| ||||| |||| |||||||    
T  6433566 ttgttaaaaccaatgcaaagatactacttttgtcttccttaaccattgctctgagggcaatg 6433505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 39972249 - 39972290
Alignment:
Q  375 caatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||||| |||||||||| ||||||||||| ||||||    
T  39972249 caatgcaaacatactatttttggtttccttaactagtgccct 39972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 44570472 - 44570537
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||| || ||||||||||    
T  44570472 gttgttgaaatcaatgcaaacatgctacttttggcttccttaaccattgcccagagggcaatggtt 44570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 36730239 - 36730291
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  36730239 gttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccct 36730291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 12051061 - 12051007
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  12051061 gttgttgaaaacaatgcaaacatgctacttttggcttccttaaccattgccctga 12051007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 10854882 - 10854840
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  10854882 gttgttgaaaccaatgcaaacatgctacttttggcttccttaa 10854840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 25102408 - 25102457
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgcc 414  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||||||    
T  25102408 ttgttgaaaccaatgcaaatatgctacttttggtttccttaactattgcc 25102457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 46317509 - 46317445
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||  |||| ||||||||||    
T  46317509 gttgttgaaaccaatgcaaacatgttacttttggcttccttaaccattg-tctgagggcaatggtt 46317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 51817399 - 51817463
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| ||| ||||||||||| |||||||||||||||| |||||||| | || |||||||    
T  51817399 ttgttgaaactaatacaaacatgctacttttggcttccttaaccattgccctcagggtaatggtt 51817463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 8715587 - 8715630
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  8715587 gttgttgaaaccaatgcaaacatgctacttttagcttccttaac 8715630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 9067474 - 9067517
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaac 407  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  9067474 gttgttgaaaccaatgcaaacatgctacttttagcttccttaac 9067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 4759936 - 4759978
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  4759936 gttgttgaaaccaatgcaaacatgttacttttggcttccttaa 4759978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 12905368 - 12905410
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  12905368 gttgttgaaaccaatgcaaacatgctactttttgcttccttaa 12905410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 31647323 - 31647273
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctga 418  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||| ||||    
T  31647323 ttgaaatcaatgcaaacatgctacttttggcttccttaaccattgctctga 31647273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 32415592 - 32415542
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgcc 414  Q
    |||||||||||||||||||||||| || |||||| ||||||||| ||||||    
T  32415592 gttgttgaaaccaatgcaaacatgttacttttggtttccttaaccattgcc 32415542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 13350870 - 13350823
Alignment:
Q  372 aaccaatgcaaacatgctatttttggcttccttaactattgccctgaa 419  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  13350870 aaccaatgcaaacatgctacttttgacttctttaactattgctctgaa 13350823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 29915664 - 29915703
Alignment:
Q  367 gttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  29915664 gttgaaaccaatgcaaacattctacttttggcttccttaa 29915703  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 29964817 - 29964856
Alignment:
Q  367 gttgaaaccaatgcaaacatgctatttttggcttccttaa 406  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  29964817 gttgaaaccaatgcaaacattctacttttggcttccttaa 29964856  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 35306351 - 35306303
Alignment:
Q  368 ttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||| |||||||||||||||| |||||| ||||||||  ||||||||    
T  35306351 ttgaaatcaatgcaaacatgctacttttggtttccttaagcattgccct 35306303  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 26572164 - 26572228
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||| |||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||    
T  26572164 ttgttaaaaccaatgcaaacatgctacttttgacttccttaaccattgccctgagggcaatggtt 26572228  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 7875268 - 7875332
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    ||||||||||||||||| |||||||| |||||||||||||||  ||||||| || ||||||||||    
T  7875268 ttgttgaaaccaatgcagacatgctacttttggcttccttaatcattgccccgagggcaatggtt 7875332  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 16437669 - 16437733
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||||||||||||||||||| | |||| ||||||||| |||||||| | ||||||||||    
T  16437669 ttgttgaaaccaatgcaaacatgctactgttggtttccttaaccattgccctcagggcaatggtt 16437733  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 32786092 - 32786041
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  32786092 gttgttgaaaccaatgcaaacatgctacttttggtttccttaaccattgccc 32786041  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 5578296 - 5578245
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccct 416  Q
    |||||||||| ||||||||||||||| ||||| |||||||||| ||||||||    
T  5578296 ttgttgaaacaaatgcaaacatgctacttttgacttccttaaccattgccct 5578245  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 12191516 - 12191466
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgcc 414  Q
    |||||||||| |||| ||||||||||| ||||| |||||||||| ||||||    
T  12191516 gttgttgaaatcaatacaaacatgctacttttgccttccttaaccattgcc 12191466  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 8324190 - 8324251
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaat 425  Q
    |||||||||||||||  ||||||| |||||||  |||||||||| |||| ||||| ||||||    
T  8324190 gttgttgaaaccaatataaacatgttatttttaccttccttaaccattgtcctgagggcaat 8324251  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 7880514 - 7880578
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccctgaaggcaatggtt 429  Q
    |||||||||| ||| || |||||||| |||||||||||||||  ||||||| || || |||||||    
T  7880514 ttgttgaaactaatacagacatgctacttttggcttccttaatcattgccccgagggtaatggtt 7880578  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 16858 - 16908
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  16858 ttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 16908  T

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Target: scaffold0062; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 27026 - 27076
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  27026 ttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 27076  T

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Target: scaffold0062; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 37192 - 37242
Alignment:
Q  365 ttgttgaaaccaatgcaaacatgctatttttggcttccttaactattgccc 415  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  37192 ttgttgaaaccaatgcaaacatgctacttttggcttccttaaccattgccc 37242  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 392218 - 392262
Alignment:
Q  364 gttgttgaaaccaatgcaaacatgctatttttggcttccttaact 408  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||    
T  392218 gttgttgaaaccgatgcaaacatgctacttttcgcttccttaact 392262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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