View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15215_high_6 (Length: 469)
Name: NF15215_high_6
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 42178623 - 42179078
Alignment:
| Q |
17 |
cagagaacactgcttatttcgacccacgtgcacnnnnnnn--tgtgaaagtatagtgataagggcacgaaggaccaaaa-tagagtatagtttgaggcaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42178623 |
cagagaacactgcttatttcgacccacgtgcacaaaaaaaaatgtgaaagtatagtgataagggcacgaaggaccaaaaatagagtatagtttgaggcaa |
42178722 |
T |
|
| Q |
114 |
gcccccaatagttgagggacacacaaaaa-gacagaaacagacttgtccatccttcttattttttccattaaaatccttgcttcattggaaacatggtgc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42178723 |
gcccccaatagttgagggacacacaaaaaagacagaaacagacttgtccatccttcttattttttccattaaaatccttgcttcattggaaacatggtgc |
42178822 |
T |
|
| Q |
213 |
aatggtacaaatcttaaagctacttaaa-ctttgtgacttattagttcttgttctactaaagtgaagcatccactaagatatgtctatcatgttcagtac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42178823 |
aatggtacaaatcttaaagctacttaaaactttgtgatttattagttcttgttctactaaagtgaagcatccactaaaatatgtctatcatgttcagtac |
42178922 |
T |
|
| Q |
312 |
attttggctttgtgctcttgtaattttagtgtataatggcctatatgagtgtattaattcttccaagttgttagagattcacacaaaatgccactctctt |
411 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42178923 |
gttttggctttgtgctcttgtaagtttagtgcataatggcctatatgagtgtattaattcttccaagttgttagagattcacacaaaatgccactctctt |
42179022 |
T |
|
| Q |
412 |
aatgctagaggccaaaattggtgtattctccaccttgttttgcatcctatgcttct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42179023 |
aatgctagaggccaaaattggtgtattctccaccttgttttgcatcctattcttct |
42179078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University