View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_high_9 (Length: 413)
Name: NF15215_high_9
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 186 - 400
Target Start/End: Original strand, 812792 - 813005
Alignment:
| Q |
186 |
gttctttgactgcgcaagagggagaagattgaagaaggtaatggaaatcaaattcattttacttacaacatgacatgaaaaacacaaaaatgaaattgta |
285 |
Q |
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| T |
812792 |
gttctttgactgcgcaagagggagaagat-gaagaaggtaatggaaatcaaattcattttacttacaacatgacatgaaaaacacaaaaatcaaattgta |
812890 |
T |
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| Q |
286 |
agtttgaaacccacaaatcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaattaaacatgttgaagatatgaaaaaga |
385 |
Q |
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| T |
812891 |
agtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaattaaacatgttgaagatatgaaaaaga |
812990 |
T |
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| Q |
386 |
aatgaagttaaccct |
400 |
Q |
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| T |
812991 |
aatgaagctaaccct |
813005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 812622 - 812719
Alignment:
| Q |
17 |
catatcgaagcatattgg-attcttcaaaactttatttaacacaacaatcactgccacagcgccaccgtgaaaacaccgtagttttcctctttagccc |
113 |
Q |
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| T |
812622 |
catatcgaagcatattgggattcttcaaaaatttatttaacacaacaatcactgccacagcgccaccgtgaaaacaccgtagttttcctctttagccc |
812719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 811833 - 811893
Alignment:
| Q |
47 |
tttatttaacacaacaatcactgccacagcgccaccgtgaaaacaccgtagttttcctctt |
107 |
Q |
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| T |
811833 |
tttatttcacacaacaatcactgccacaacgccaccgtgcatacaccatcgttttcctctt |
811893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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