View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_low_1 (Length: 776)
Name: NF15215_low_1
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 39298920 - 39299171
Alignment:
| Q |
1 |
ccgcagtccaccctgccacggtggccttatccttcaaatcaaccgccactttgcttgcaacttccgcagcagtcttccctgtctctacagtaacatcctt |
100 |
Q |
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| T |
39298920 |
ccgcagtccaccctgccacggtggccttatccttcaaatcaaccgccactttgcttgcaacttccgcagcagtcttccctgtctctacagtaacatcctt |
39299019 |
T |
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| Q |
101 |
tgcctgaacaactgcagacttggctttctccgccacaggggtagcatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299020 |
tgcctgaacaactgcagacttggctttctccgccacaggggtaacatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataa |
39299119 |
T |
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| Q |
201 |
ccttgttgtgttttctcaagagttgcatctttggcttgtgctgctttctcca |
252 |
Q |
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| T |
39299120 |
ccttgttgtgttttctcaacagttgcatctttggcttgtgctgctttctcca |
39299171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 643 - 760
Target Start/End: Original strand, 39299562 - 39299679
Alignment:
| Q |
643 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
742 |
Q |
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| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
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| Q |
743 |
tcccattcctctgttcat |
760 |
Q |
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| T |
39299662 |
tcccattcctctgttcat |
39299679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 444 - 552
Target Start/End: Original strand, 39299363 - 39299471
Alignment:
| Q |
444 |
tgttcagcaccactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcatttt |
543 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39299363 |
tgttcagcagcactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcatttt |
39299462 |
T |
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| Q |
544 |
caccaccaa |
552 |
Q |
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||||||||| |
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| T |
39299463 |
caccaccaa |
39299471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 39299247 - 39299332
Alignment:
| Q |
328 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299247 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
39299332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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