View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_low_13 (Length: 356)
Name: NF15215_low_13
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 28938547 - 28938210
Alignment:
| Q |
1 |
ccattcaaatacatttactttaatatgttcttgtggtttatatttatgcatttgatactgccatgacaatccaccgtcttatatgtttctggaaaatatg |
100 |
Q |
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| T |
28938547 |
ccattcaaatacatttactttaatttgttcttgtggtatatatttatgcatttcatactgccatgacaatccaccgtcttatatgtttctggaaaatatg |
28938448 |
T |
|
| Q |
101 |
atcttgcccgagtttttcttacaaatgcctctatatatattgtttgaacctacatatcttgaattccgattatataaaaaatgcttgatatattgccgtt |
200 |
Q |
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| T |
28938447 |
atcttgcccgagtttttcttacaaatgcctctatatat--tgtttgaacctacatatcttgaattctgattatataaaaaatgcttgatatattgctgtt |
28938350 |
T |
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| Q |
201 |
atttatgcttgataatatgttggtgttatgtatgcttgatatgttggtgttatatctatattcaattctaagagatttcacaatttatgtggtatacttt |
300 |
Q |
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| T |
28938349 |
atttatgcttgataatatgttggtgttatgtatgcttgatatgttggtgttatatctatcttcaattctaagagatttcacaatttatgtggtatacttt |
28938250 |
T |
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| Q |
301 |
ttatttttgtggtgttgcgattgaacactgccccagaatt |
340 |
Q |
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| T |
28938249 |
ttatttttgtggtgttgcgattgaacactgccccagaatt |
28938210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 28927011 - 28926938
Alignment:
| Q |
42 |
atttatgcatttgatactgccatgacaatccaccgtcttatatgtttctggaaaatatgatcttgcccgagttt |
115 |
Q |
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| T |
28927011 |
atttatgcatttgatcccaccatgacaattagccatcttgtatctttcttgaaaatatgctcttgcccgagttt |
28926938 |
T |
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