View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_low_5 (Length: 517)
Name: NF15215_low_5
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 52329581 - 52330088
Alignment:
| Q |
1 |
actagaaggtggtgaatatgtgagaaaggtgtcagaaaattgcattgctcat--gaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaa |
98 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
52329581 |
actagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgcccatatgaaatttgaaggaacatatggcgatgcagaagaaaaagccattcaa |
52329680 |
T |
|
| Q |
99 |
gaatttagagaagcttttaaggatcaattttttccaccagggactgctgctttctacagacaatcaccaaatggaacattaggggttagtatcattaata |
198 |
Q |
| |
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||| |||||||||| || |||| ||||||||||||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52329681 |
gaacttagagaagccttcaaggttcaattttttccaccaggggctggtgttttcttcagacaatcaccaaatggagcattaggggttagtatcattaata |
52329780 |
T |
|
| Q |
199 |
ttacaaactgcattgatttgaatatccattttaatcaacacattttgatatttcattttctgcaaattaatcacagcttagattctccaaagatgagaca |
298 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52329781 |
taacaaactgcattgatttgaatatccattttaatcaacacattttgatatttcattttctgcaaattaatcacagcttagattctccaaagatgaaaca |
52329880 |
T |
|
| Q |
299 |
atacctgaacatgagtatgctgttataaacaacaagccgctttcggaggcggtgttggagacaatgattggagaaattcctgtttcccctgctttgaaag |
398 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52329881 |
ataccggaacatgagtatgttgttataaacaacaagccactttcagaggcagtgttggagaccatgattggagaaattcctgtttcccctgctttgaaag |
52329980 |
T |
|
| Q |
399 |
agagtttggctacaagattttatgagtttatgaagattgacaacttcaacatttgaaacttataa--ctaagcag-ctgctatgattttgaaggcgaggt |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||| ||||||||||||| |
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| T |
52329981 |
agagtttggctacaagattttatgagtttatgaagattgacaacttcaacatttgaaacttataattataagcagtcgtctttgatcttgaaggcgaggt |
52330080 |
T |
|
| Q |
496 |
gatctttg |
503 |
Q |
| |
|
|||||||| |
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|
| T |
52330081 |
gatctttg |
52330088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 52325151 - 52325612
Alignment:
| Q |
1 |
actagaaggtggtgaatatgtgagaaaggtgtcagaaaattgcattgctcat--gaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaa |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52325151 |
actagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgcccatatgaaatctgaaggaacatatggcgatgcagaagaaaaagccattcaa |
52325250 |
T |
|
| Q |
99 |
gaatttagagaagcttttaaggatcaattttttccaccagggactgctgctttctacagacaatcaccaaatggaacattaggggttagtatcattaata |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
52325251 |
gaatttagagaagcttttaaggatcaattttttccaccaggaactgctgctttctacagacaatcaccaaatggagcattaggggttagtgtcattaata |
52325350 |
T |
|
| Q |
199 |
ttacaaactgcattgatttgaatatccattttaatcaacacattttgatatttcattttctgcaaattaatcaca--gcttagattctccaaagatgaga |
296 |
Q |
| |
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|||| | ||||| || | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
52325351 |
ttacctattgcatgtatctaaatatccattttaatcaacacattttgatatttctttttctacaaattaatcacacagcttagattctccaaagatgaga |
52325450 |
T |
|
| Q |
297 |
caatacctgaacatgagtatgctgttataaacaacaagccgctttcggaggcggtgttggagacaatgattggagaaattcctgtttcccctgctttgaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
52325451 |
caatacctgaacatgagtatgctgttataaacaacaagccgctttcggaagcagtgttggagaccatgattggagaaatccctgtttcccctgctttgaa |
52325550 |
T |
|
| Q |
397 |
agagagtttggctacaagattttatgagtttatgaagattgacaacttcaacatttgaaact |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
52325551 |
agagagtttggctacaagattttatgagtttctgaagattgacaacttcaacattcgaaact |
52325612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 52322308 - 52322402
Alignment:
| Q |
356 |
gagacaatgattggagaaattcctgtttcccctgctttgaaagagagtttggctacaagattttatgagtttatgaagattgacaacttcaacat |
450 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
52322308 |
gagactatgattggagaaatttctgtttcccctgctttgaaagagagtttggctacaagattttatgatcttatgaagattaacaatttcaacat |
52322402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52332817 - 52332889
Alignment:
| Q |
1 |
actagaaggtggtgaatatgtgagaaaggtgtcagaaaattgcattgctc--atgaaatctgaaggaacatat |
71 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
52332817 |
actagacggtagtgaatatgtgagaaaggtgtcagaaaattgcattgcccatatgaaatctgaaggaacatat |
52332889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 52322108 - 52322198
Alignment:
| Q |
100 |
aatttagagaagcttttaaggatcaattttttccaccagggactgctgctttctacagacaatcaccaaatggaacattaggggttagtat |
190 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| | || || || |||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
52322108 |
aatttagagaagccttcaaggatcaaaattttccaactggcgctagtgttttctacaaacaatcaccaactggaacattaggggttagtat |
52322198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 52322048 - 52322108
Alignment:
| Q |
12 |
gtgaatatgtgagaaaggtgtcagaaaattgcattgct--catgaaatctgaaggaacata |
70 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||| |
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|
| T |
52322048 |
gtgaatatgtgaggaaggtgtcagaaaattgtattgcttatatgaaatctgatggaacata |
52322108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 378 - 503
Target Start/End: Original strand, 9179536 - 9179661
Alignment:
| Q |
378 |
ctgtttcccctgctttgaaagagagtttggctacaagattttatgagtttatgaagattgacaacttcaacatttgaaacttataactaagcagctgcta |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9179536 |
ctgtttcccctgctttgaaagagagtttggctacaagattttgtgagtttatgaagattgacaacttcaacatttgaaacttataactaagcagctgcta |
9179635 |
T |
|
| Q |
478 |
tgattttgaaggcgaggtgatctttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
9179636 |
tgattttgaaggcgaggtgatctttg |
9179661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 9179381 - 9179540
Alignment:
| Q |
151 |
tctacagacaatcaccaaatggaacattaggggttagtatcattaatattacaaactgcattgatttgaatatccattttaatcaacacattttgatatt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9179381 |
tctacagacaatcaccaaatggaacattaggggttagtatcattaatattacaaactgcattgatttgaatatccatttta--------------atatt |
9179466 |
T |
|
| Q |
251 |
tcattttctgcaaattaat--cacagcttagattctccaaagatgagacaatacctgaacatgagtatgctgtt |
322 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9179467 |
tctttttctacaaattaatcacacagcttagattctccaaagatgagacaatacatgaacatgagtatgctgtt |
9179540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9179278 - 9179381
Alignment:
| Q |
1 |
actagaaggtggtgaatatgtgagaaaggtgtcagaaaattgcattgctcat--gaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaa |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9179278 |
actagaaggtagtgaatatgtgagaaaggtatcagaaaattgcattgcccatatgaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaa |
9179377 |
T |
|
| Q |
99 |
gaat |
102 |
Q |
| |
|
|||| |
|
|
| T |
9179378 |
gaat |
9179381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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