View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15215_low_6 (Length: 495)
Name: NF15215_low_6
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 55337186 - 55337457
Alignment:
| Q |
1 |
atgattgtacgtatgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55337186 |
atgattgtacgtatgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtttatatatatactat-----tgtgacagggaggatgagtgca |
55337280 |
T |
|
| Q |
101 |
acttgtaatgttatagttttattcaattttttaagacaa-gagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337281 |
acttgtaatgttatagttttattcaattttttagtacaaagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaat |
55337380 |
T |
|
| Q |
200 |
atttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337381 |
atttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 325 - 475
Target Start/End: Original strand, 55337473 - 55337623
Alignment:
| Q |
325 |
aaattaatagacaataattcaagatgttataagaaattaaaacaattttcccaggttataaaacttgttcacaattgcaaagacaaatattttctgtctc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55337473 |
aaattaatagacaataattcaagatgttatacgaaattaaaacaattttcccaggttataaaacttgttcacaattgcaaagacaattattttctgtctc |
55337572 |
T |
|
| Q |
425 |
aaattnnnnnnntgtttttgttccagcttagatgtctagttagttgtctgt |
475 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337573 |
aaattaaaaaaatgtttttgttccagcttagatgtctagttagttgtctgt |
55337623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University