View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15215_low_8 (Length: 452)

Name: NF15215_low_8
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15215_low_8
NF15215_low_8
[»] chr8 (5 HSPs)
chr8 (20-320)||(30665729-30666029)
chr8 (368-452)||(30666044-30666128)
chr8 (360-412)||(2373280-2373332)
chr8 (358-402)||(16233704-16233748)
chr8 (373-405)||(29968386-29968418)
[»] chr5 (4 HSPs)
chr5 (155-421)||(29822121-29822388)
chr5 (368-420)||(19005820-19005872)
chr5 (360-404)||(20869238-20869282)
chr5 (373-417)||(39573787-39573831)
[»] chr4 (7 HSPs)
chr4 (215-284)||(28114903-28114972)
chr4 (373-421)||(10758746-10758794)
chr4 (202-289)||(48905690-48905777)
chr4 (148-210)||(9759868-9759930)
chr4 (148-210)||(16964813-16964875)
chr4 (376-417)||(50073560-50073601)
chr4 (373-417)||(1186666-1186710)
[»] chr6 (2 HSPs)
chr6 (376-421)||(18021735-18021780)
chr6 (373-421)||(4002794-4002842)
[»] chr3 (2 HSPs)
chr3 (377-421)||(31214508-31214552)
chr3 (373-405)||(46719961-46719993)
[»] scaffold0002 (1 HSPs)
scaffold0002 (171-248)||(15658-15736)
[»] chr7 (2 HSPs)
chr7 (150-248)||(20228290-20228387)
chr7 (360-405)||(47113365-47113410)
[»] scaffold0302 (1 HSPs)
scaffold0302 (373-405)||(17490-17522)
[»] chr1 (1 HSPs)
chr1 (377-417)||(30928629-30928669)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 30665729 - 30666029
Alignment:
Q  20 tgagtgatgcgtatagaatgtcaatattagtttttaaacttatttcttcgttgttgttgtatttattctatgagctcttatgaatgtttatagtttacat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30665729 tgagtgatgcgtatagaatgtcaatattagtttttaaacttatttcttcgttgttgttgtatttattctatgagctcttatgaatgtttatagtttacat 30665828  T
Q  120 gatagccatttgaatttaatttatctttggcttatatgcattttttactctttaacttttcaaaagttgcgattctgacccctaacaaaaattaacaatt 219  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  30665829 gaaagccatttgaatttaatttatctttggcttatatgcattttttactctttaactttttaaaagttgcgattttgacccctaacaaaaaataacaatt 30665928  T
Q  220 ttgtcccctaactttacaaaatgttgcaatttttaccccttatctttaagaaacagcaattttggaccctgttttgagatatgtggcgtcttcttagcaa 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  30665929 ttgtcccctaactttacaaaatattgcaatttttaccccttatctttaagaaacagcaactttggaccctgttttgagatatgtggtgtcttcttagcaa 30666028  T
Q  320 a 320  Q
    |    
T  30666029 a 30666029  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 368 - 452
Target Start/End: Original strand, 30666044 - 30666128
Alignment:
Q  368 ttggtgggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcatttatacataaagagacttatattgataggctctt 452  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30666044 ttggtgggccaaaatcacaagtttttaaaagttaagggaccaaaagtgcatttatacataaagagacttatattgataagctctt 30666128  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 2373332 - 2373280
Alignment:
Q  360 ttttcttgttggtgggccaaaatcgcaagtttttaaaagttaagggaccaaaa 412  Q
    |||| ||||| | ||||||||||| ||| ||||||||||||||||| ||||||    
T  2373332 tttttttgttagggggccaaaatcacaactttttaaaagttaaggggccaaaa 2373280  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 16233704 - 16233748
Alignment:
Q  358 tattttcttgttggtgggccaaaatcgcaagtttttaaaagttaa 402  Q
    |||||| ||||| | ||||||||||||||| ||||||||||||||    
T  16233704 tatttttttgttagggggccaaaatcgcaactttttaaaagttaa 16233748  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 29968386 - 29968418
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaaggg 405  Q
    |||||||||| ||||||||||||||||||||||    
T  29968386 gggccaaaattgcaagtttttaaaagttaaggg 29968418  T

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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 155 - 421
Target Start/End: Original strand, 29822121 - 29822388
Alignment:
Q  155 atgcattttttactctttaacttttcaaaagttgcgattctgacc-cctaacaaaaattaacaattttgtcccctaactttacaaaatgttgcaattttt 253  Q
    ||||| |||| ||||  |||||||||||||||| ||||| ||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| |||||    
T  29822121 atgcacttttgactccataacttttcaaaagttacgattttgacctcctaacaaaaaataaaaattttg-cccctaacattacaaaatgttgcacttttt 29822219  T
Q  254 accccttatctttaagaaacagcaattttggaccct--gttttgagatatgtggcgtcttcttagcaaatttggccccttatctttaagttgggggccaa 351  Q
      ||||||||||||| ||| | |||||  |  |||   | ||||||| |||||||||||||| | ||| ||||||| |||||||||||||  ||||||||    
T  29822220 gtcccttatctttaaaaaataacaattccgacccccacgctttgagacatgtggcgtcttctcaacaattttggcctcttatctttaagtcaggggccaa 29822319  T
Q  352 gattgctattttcttgttggtgggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcattta 421  Q
     |||| |||||| ||||||| |||| ||||||| |||| ||||||| |||  ||| ||||||||||||||    
T  29822320 aattgttattttattgttgg-gggctaaaatcgtaagtctttaaaaattagaggatcaaaagtgcattta 29822388  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 19005820 - 19005872
Alignment:
Q  368 ttggtgggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcattt 420  Q
    |||| ||||||||||||||||||| | ||| ||  ||||||||||||||||||    
T  19005820 ttggggggccaaaatcgcaagtttgtgaaactttggggaccaaaagtgcattt 19005872  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 20869238 - 20869282
Alignment:
Q  360 ttttcttgttggtgggccaaaatcgcaagtttttaaaagttaagg 404  Q
    |||| ||||| ||||||||||||||||  ||||||||||||||||    
T  20869238 tttttttgttagtgggccaaaatcgcatctttttaaaagttaagg 20869282  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 39573787 - 39573831
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgca 417  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||    
T  39573787 gggccaaaatcgcaacttttaaaaagataggggaccaaaagtgca 39573831  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 28114972 - 28114903
Alignment:
Q  215 caattttgtcccctaactttacaaaatgttgcaatttttaccccttatctttaagaaacagcaattttgg 284  Q
    |||||||||||||||||||||||||||||||| |||||  || |||| |||||| ||| | |||||||||    
T  28114972 caattttgtcccctaactttacaaaatgttgctattttcgcctcttaactttaaaaaataacaattttgg 28114903  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 10758746 - 10758794
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcattta 421  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| |||||    
T  10758746 gggccaaaatcgcaactttttaaaagttaaggggccaaaagtgtattta 10758794  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 48905777 - 48905690
Alignment:
Q  202 taacaaaaattaacaattttgtcccctaactttacaaaatgttgcaatttttaccccttatctttaagaaacagcaattttggaccct 289  Q
    ||||||||| |||||||||   || ||||||||||||||  ||| ||||||| ||| |||||||||| ||| ||||||| ||| ||||    
T  48905777 taacaaaaaataacaatttcaccctctaactttacaaaacattgtaatttttgccctttatctttaaaaaatagcaattatggcccct 48905690  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 9759868 - 9759930
Alignment:
Q  148 ggcttatatgcattttttactctttaacttttcaaaagttgcgattctgacccctaacaaaaa 210  Q
    |||||| |||||||||| |||| || |||||| |||||||||||||  ||||||| |||||||    
T  9759868 ggcttaaatgcatttttaactcatttacttttaaaaagttgcgatttggacccctgacaaaaa 9759930  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 16964875 - 16964813
Alignment:
Q  148 ggcttatatgcattttttactctttaacttttcaaaagttgcgattctgacccctaacaaaaa 210  Q
    |||||| || ||||| | || ||||||||||| ||||||||||||| || |||||||||||||    
T  16964875 ggcttaaatacatttgtgaccctttaacttttaaaaagttgcgattttggcccctaacaaaaa 16964813  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 50073560 - 50073601
Alignment:
Q  376 ccaaaatcgcaagtttttaaaagttaagggaccaaaagtgca 417  Q
    |||||||||||| |||| ||||| ||||||||||||||||||    
T  50073560 ccaaaatcgcaacttttaaaaagataagggaccaaaagtgca 50073601  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 1186710 - 1186666
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgca 417  Q
    ||||||||||||||| |||| |||||||| ||| |||||||||||    
T  1186710 gggccaaaatcgcaacttttaaaaagttagggggccaaaagtgca 1186666  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 18021780 - 18021735
Alignment:
Q  376 ccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcattta 421  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||    
T  18021780 ccaaaattgcaagttttgaaaacttaagggaccaaaagtgcattta 18021735  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 4002842 - 4002794
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaagggaccaaaagtgcattta 421  Q
    ||||||||||| |||||||||| |||||| ||  |||||||||||||||    
T  4002842 gggccaaaatctcaagtttttagaagttagggatccaaaagtgcattta 4002794  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 31214508 - 31214552
Alignment:
Q  377 caaaatcgcaagtttttaaaagttaagggaccaaaagtgcattta 421  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||    
T  31214508 caaaattgcaagtttttaaaagttaagggacctaaaatgcattta 31214552  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 46719993 - 46719961
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaaggg 405  Q
    ||||||||||||||| |||||||||||||||||    
T  46719993 gggccaaaatcgcaactttttaaaagttaaggg 46719961  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 15736 - 15658
Alignment:
Q  171 ttaacttttcaaaagttgcgattctgacccctaacaaaaat-taacaattttgtcccctaactttacaaaatgttgcaa 248  Q
    ||||||||| ||||||||| ||| |||||||  | |||||| ||||||||||  ||| |||||||| ||||||||||||    
T  15736 ttaacttttaaaaagttgcaattttgaccccctaaaaaaatataacaattttaccccttaactttataaaatgttgcaa 15658  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 20228387 - 20228290
Alignment:
Q  150 cttatatgcattttttactctttaacttttcaaaagttgcgattctgacccctaacaaaaattaacaattttgtcccctaactttacaaaatgttgcaa 248  Q
    |||| |||||||||| |||| |||| |||| ||||||| || || ||||| |||| ||||| | |||||||| | || ||||||||||||| |||||||    
T  20228387 cttaaatgcatttttgactcattaatttttaaaaagttacggttttgacctctaaaaaaaagttacaattttattcc-taactttacaaaacgttgcaa 20228290  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 47113365 - 47113410
Alignment:
Q  360 ttttcttgttggtgggccaaaatcgcaagtttttaaaagttaaggg 405  Q
    |||| ||||| | ||||||||||||||| |||||||||||||||||    
T  47113365 tttttttgttagggggccaaaatcgcaactttttaaaagttaaggg 47113410  T

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Target: scaffold0302 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 17522 - 17490
Alignment:
Q  373 gggccaaaatcgcaagtttttaaaagttaaggg 405  Q
    |||||||||| ||||||||||||||||||||||    
T  17522 gggccaaaattgcaagtttttaaaagttaaggg 17490  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 30928629 - 30928669
Alignment:
Q  377 caaaatcgcaagtttttaaaagttaagggaccaaaagtgca 417  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  30928629 caaaatcgcaactttttaaaagttaagggatcaaaggtgca 30928669  T

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