View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15215_low_9 (Length: 441)
Name: NF15215_low_9
Description: NF15215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15215_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 21433694 - 21433923
Alignment:
| Q |
18 |
gcttcaaccctccaagaacttcaagagtatgttaatatacaatggtcgacaatatttggttgtccatttatcatttctctaacatatatgctccacggcg |
117 |
Q |
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| T |
21433694 |
gcttcaaccctccaagaacttcaagagtatgttaatatacaatggtggacaatatttggttgtccatttatcatttctctaacatatatgctccacggcg |
21433793 |
T |
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| Q |
118 |
agaaggtgttgattgggggataaaaggaattcattgaccaaatcgaaaatttttctaatggctaggtgtcttaaacctaaatattttccatgaaatattt |
217 |
Q |
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| T |
21433794 |
agaaggtgttgattgggggataaaaggaattcattgaccaaatcgaaaaattttctaatggctaggtgtcttaaacctaaatattttccatgaaatattt |
21433893 |
T |
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| Q |
218 |
tcttaaggcttccttgggccattcccctag |
247 |
Q |
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| T |
21433894 |
tcttaaggcttccttgggccattcccctag |
21433923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 249 - 433
Target Start/End: Original strand, 21434493 - 21434677
Alignment:
| Q |
249 |
ccctagctacacatggagaaacttgtttgaaaaataaggaatgggaaggacatcaatatcagaaaagataattggtttcaagtcctaacatgaaaacctt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434493 |
ccctagctacacatggagaaacttgtttgaaaaataaggaatgggaaggacatcaatatcagaaaagataattggtttcaagtcctaacatgaaaacctt |
21434592 |
T |
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| Q |
349 |
gggaaataaaaatcctatagattagggatattttttatgttgaaaactgttgtctgaacaatacccaagtgctaccccctttgat |
433 |
Q |
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| T |
21434593 |
gggaaataaaaatcatatagattagggatattttttatgttgaaaactgttgtctgaacaatacccaagtgctaccccctttgat |
21434677 |
T |
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