View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15216_low_1 (Length: 732)
Name: NF15216_low_1
Description: NF15216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15216_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 49 - 532
Target Start/End: Complemental strand, 32782198 - 32781715
Alignment:
| Q |
49 |
atatactattagcgcgcttatattttcagttatgcaaattcggcctagtgaggggatgggagtaggctacaccgcaaggatgacattagttgaattggta |
148 |
Q |
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| T |
32782198 |
atatactattagcgcgcttatattttaagttatgcaaattcggcctagtgaggggatgggagtaggctacaccgcaaggatgacattagttgaattggta |
32782099 |
T |
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| Q |
149 |
taaatctcttttggttacaaaattggtataaatctct--gtcgatttttcttttccctatctctctttaatttatgaaaatttgaatactttgttgattg |
246 |
Q |
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| T |
32782098 |
taaatctcttttggttacaaaattggtataaatctctatgtccatttttcttttccctatctctctttaatttatgaaaatttgaatactttgttgattg |
32781999 |
T |
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| Q |
247 |
attgcaaaagaaattttttaatctcaagaaatttttctgagcaatttttcaaacacaagttttgcaaagatttcaactttttcatggtgtaggaattctt |
346 |
Q |
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| T |
32781998 |
attgcaaaagaaattttttaatctcaagaaatttttctgcgctatttttcaaacacaagttttgcaaagatttcaactttttcatggtgtaggaattatt |
32781899 |
T |
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| Q |
347 |
ctcagattattgaacaattctttttaaagactcatagaaattcagccttaattgtgatttttgaatttcatgagagtgttaatttttgctttattattga |
446 |
Q |
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| T |
32781898 |
ctcagaatattgaaaaaatctttttaaagactc--agaaattcagacttaattgtgatttttgaatttcatgagagtgttaatttttactttattgttga |
32781801 |
T |
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| Q |
447 |
tatatcgcattgagaggctcagtagtgatttttatgataagcggtgttaatttgcttgagttaattcttaaataattagtaaatta |
532 |
Q |
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| T |
32781800 |
tatatcgcattgagtagctcagtagtgatttttgtgataagcggtgttaatttgcttgagttgattcttaaataattagtaaatta |
32781715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 633 - 724
Target Start/End: Complemental strand, 32781610 - 32781519
Alignment:
| Q |
633 |
tttaagttccaagcttatctatcaagaggagcgactccatgtcctttggggaacggtctgaggtaatagtagaagccaaatgagagtattat |
724 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||| |
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| T |
32781610 |
tttaagttccaagcttatctatcaagaggagcgactccatgttctttgggggacggtctgaggtaatagtagaagctaaatgagagtcttat |
32781519 |
T |
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