View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15216_low_3 (Length: 237)
Name: NF15216_low_3
Description: NF15216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15216_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 38643386 - 38643179
Alignment:
| Q |
10 |
attattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagcttttatgacaggctcagtggatgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38643386 |
attattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaacaactaagtactagcttttatgacaggctcagtggatgag |
38643287 |
T |
|
| Q |
110 |
aatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttctgttgaattactaaaatactactactcactattt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38643286 |
aatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgtgtttttgttgaattactaaaatactactactcactattt |
38643187 |
T |
|
| Q |
210 |
catttcat |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
38643186 |
catttcat |
38643179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University