View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15217_high_1 (Length: 788)

Name: NF15217_high_1
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15217_high_1
NF15217_high_1
[»] chr5 (16 HSPs)
chr5 (86-788)||(14741965-14742668)
chr5 (115-357)||(15010407-15010650)
chr5 (144-357)||(14290391-14290604)
chr5 (115-357)||(15053333-15053579)
chr5 (83-214)||(14283223-14283354)
chr5 (1-57)||(14741905-14741961)
chr5 (1-57)||(15053617-15053673)
chr5 (1-60)||(15010685-15010744)
chr5 (441-511)||(15010220-15010290)
chr5 (231-357)||(15056144-15056270)
chr5 (221-276)||(14283141-14283196)
chr5 (656-718)||(14745274-14745336)
chr5 (1-52)||(14283356-14283407)
chr5 (429-515)||(15056389-15056474)
chr5 (516-614)||(15010073-15010167)
chr5 (1-30)||(14290660-14290689)


Alignment Details
Target: chr5 (Bit Score: 656; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 86 - 788
Target Start/End: Original strand, 14741965 - 14742668
Alignment:
Q  86 cagagtattaaaatcacacaggcagtaagcctttaatatataaacagcaaaagggt-acatgtttatattgccattttctatcatttctggagtcgaaaa 184  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14741965 cagagtattaaaatcacacatgcaataagcctttaatttataaacagcaaaagggttacatgtttatattgccattttctatcatttctggagtcgaaaa 14742064  T
Q  185 tacaataattgaaacacttcccttttgcaaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaactcaattaaaaataggatgt 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14742065 tacaataattgaaacacttcgcttttgcaaaatttattccttaaagggatccaaatctgcacctcaactccataaagaaactcaattaaaaataggatgt 14742164  T
Q  285 gtgcataccaggagatctactgcttggatcaaatgctccagatgtgccttcctgatgctgctttacttcctgcttgaatgacataagtgaaggttaattt 384  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742165 gtgcataccagtagatctactgcttggatcaaatgctccagatgtgccttcctgatgctgctttacttcctgcttgaatgacataagtgaaggttaattt 14742264  T
Q  385 gtataatcggcagatccatggcttggttgcggcagatccaatgtacaaaacatgttgcaagaattctactaaagtttgtgcctcagataaggatgttatc 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14742265 gtataatcggcagatccatggcttggttgcggcagatccaatgtacaaaacatgatgcaagaattctactaaagtttgtgcctcagataaggatgttatc 14742364  T
Q  485 gattttagctatagttaaaaccaactataacgagtatggctttcccttctttccttgaccaagcaattatagagactttttcatgcagagacaaaagaaa 584  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742365 gattttagctattgttaaaaccaactataacgagtatggctttcccttctttccttgaccaagcaattatagagactttttcatgcagagacaaaagaaa 14742464  T
Q  585 aaatgatttgtgttgacagtagtaacattaatgccaatcctggtcttctcttccaatattcatgttggattgatatgtctctccctctagtatttcttca 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14742465 aaatgatttgtgttgacagtagtaacattaatgccaatcctggtcttctcttgcaatattcatgttggattgatatgtctctccctctagtatttcttca 14742564  T
Q  685 tttaaattagtgctaagcttttaggttcctgagtagtgctaagagcttaggaaacaattggactcatatcgaagacgtaaaaaacataggactactgttt 784  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14742565 tttaaattagtgctaagcttttaggttcctgagtagtgctaagagcttaggaaacaattggactcatatcgaagacgtaaaaaacataggtctactgttt 14742664  T
Q  785 tgta 788  Q
    ||||    
T  14742665 tgta 14742668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 15010650 - 15010407
Alignment:
Q  115 cctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaatacaat-aattgaaacacttccctttt-gc 212  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||||| ||    
T  15010650 cctttaagctataaacaccaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaa-acaagcaattgaaacacttcactttttgc 15010552  T
Q  213 aaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaactcaattaaaaataggatgtgtgcataccaggagatctactgcttgga 312  Q
    ||| ||| |||||| |||||||| || ||||||||||||||||||||| ||  ||||||||||| | |||||   |||||||| ||||||||||||||||    
T  15010551 aaattttcttcctttaagggatcaaattctgcacctcaactccacaaacaaggtcaattaaaaacatgatgtacacataccagtagatctactgcttgga 15010452  T
Q  313 tcaaatgctccagatgtgccttcctgatgctgctttacttcctgc 357  Q
     |||  |||| ||||||||||||||||||||||| ||||||||||    
T  15010451 acaacagctctagatgtgccttcctgatgctgctctacttcctgc 15010407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 144 - 357
Target Start/End: Complemental strand, 14290604 - 14290391
Alignment:
Q  144 atgtttatattgccattttctatcatttctggagtcgaaaatacaa-taattgaaacacttcccttttgcaaaatttattccttaaagggatccaaatct 242  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  14290604 atgtttatattgccattttctatcatttcaggagtcgaaaa-acaagtaattggaacacttcccttttgcaaattttcttcctcaaagggatccaaatct 14290506  T
Q  243 gcacctcaactccacaaagaaactcaattaaaaataggatgtgtgcataccaggagatctactgcttggatcaaatgctccagatgtgccttcctgatgc 342  Q
    |||||||||||||||||||||| ||||||||||| ||||||||   |||||||  |||| | |||||||| ||   |||| ||||||||||||||||| |    
T  14290505 gcacctcaactccacaaagaaaatcaattaaaaacaggatgtggaaataccagtggatccagtgcttggaacattagctctagatgtgccttcctgatcc 14290406  T
Q  343 tgctttacttcctgc 357  Q
    |||| ||||||||||    
T  14290405 tgctctacttcctgc 14290391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 15053579 - 15053333
Alignment:
Q  115 cctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaaaatacaa-taattgaaacacttcc-----ctt 208  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||| |||| ||||||||| ||||       |||    
T  15053579 cctttaagttataaacagcaaaatggtacatgtttatattgccattttcaatcatttctagagtcaaaaa-acaagtaattgaaatacttatactttctt 15053481  T
Q  209 ttgcaaaatttattccttaaagggatccaaatctgcacctcaactccacaaagaaactcaattaaaaataggatgtgtgcataccaggagatctactgct 308  Q
    ||||||| ||| || |||||||||| ||||||||||||||| || | ||| ||||| ||||||||||| ||||||||   ||||||| ||||| | ||||    
T  15053480 ttgcaaattttctttcttaaagggacccaaatctgcacctcgac-caacatagaaaatcaattaaaaacaggatgtgcaaataccagtagatcaattgct 15053382  T
Q  309 tggatcaaatgctccagatgtgccttcctgatgctgctttacttcctgc 357  Q
    |||| |||  |||| |||||||||||| ||||| |||| ||||||||||    
T  15053381 tggaacaacagctctagatgtgccttcttgatgttgctctacttcctgc 15053333  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 14283354 - 14283223
Alignment:
Q  83 caacagagtattaaaatcacacaggcagtaagcctttaatatataaacagcaaaagggtacatgtttatattgccattttctatcatttctggagtcgaa 182  Q
    |||||||| |||| |||||||||  ||||   |||||||  ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  14283354 caacagagcattataatcacacatacagtgtacctttaagttatgaacagcaaaagggtacatgtttatattgccattttctagaatttctggagtcgaa 14283255  T
Q  183 aatacaa-taattgaaacacttcccttttgcaa 214  Q
     | |||| |||||||||||||||||||||||||    
T  14283254 ta-acaagtaattgaaacacttcccttttgcaa 14283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14741905 - 14741961
Alignment:
Q  1 tcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactac 57  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  14741905 tcaagattgataatcaactccagctagaaacatggcaaagtaaaagactcatactac 14741961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15053673 - 15053617
Alignment:
Q  1 tcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactac 57  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  15053673 tcaagattgataatcaactccagttagaaacatggcacagtaaaagactcatactac 15053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15010744 - 15010685
Alignment:
Q  1 tcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcatactaccag 60  Q
    |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  15010744 tcaagattgataatcaactccagttagaaacatggcacagtaaacgactcatactaccag 15010685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 511
Target Start/End: Complemental strand, 15010290 - 15010220
Alignment:
Q  441 gcaagaattctactaaagtttgtgcctcagataaggatgttatcgattttagctatagttaaaaccaacta 511  Q
    |||| ||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||||    
T  15010290 gcaacaattctactaaagtttgagccttagataaggatattattgattttagctatagttaaaatcaacta 15010220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 357
Target Start/End: Original strand, 15056144 - 15056270
Alignment:
Q  231 ggatccaaatctgcacctcaactccacaaagaaactcaattaaaaataggatgtgtgcataccaggagatctactgcttggatcaaatgctccagatgtg 330  Q
    |||||||||||||| ||| |||| |||| ||||| ||||||||||  |||||||   |||||||| |||||||| ||||||| |||  |||| |||||||    
T  15056144 ggatccaaatctgcgccttaacttcacagagaaaatcaattaaaagcaggatgtacacataccagtagatctacggcttggaacaacagctctagatgtg 15056243  T
Q  331 ccttcctgatgctgctttacttcctgc 357  Q
    |||||||||| | ||| |||| |||||    
T  15056244 ccttcctgataccgctctactccctgc 15056270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 14283196 - 14283141
Alignment:
Q  221 ttccttaaagggatccaaatctgcacctcaactccacaaagaaactcaattaaaaa 276  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  14283196 ttccttaaagggatccaaatctgcacctcaacgccacaaagaaaagcaattaaaaa 14283141  T

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Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 14745274 - 14745336
Alignment:
Q  656 gatatgtctctccctctagtatttcttcatttaaattagtgctaagcttttaggttcctgagt 718  Q
    |||||| |||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||    
T  14745274 gatatgcctctccctctggtatttcttcatttaaagtagatctaagcttttaggttcctgagt 14745336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14283407 - 14283356
Alignment:
Q  1 tcaagattgataatcaactccagttagaaatatggcaaagtaaaagactcat 52  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  14283407 tcaagatcgataatcaactccagttagaaaaatggcacagtaaaagactcat 14283356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 515
Target Start/End: Original strand, 15056389 - 15056474
Alignment:
Q  429 acaaaacatgttgcaagaattctactaaagtttgtgcctcagataaggatgttatcgattttagctatagttaaaaccaactataac 515  Q
    |||||||| | ||||||| ||||||||| |||||||||| ||||||| || |||| |||||| || |||| ||||||||||||||||    
T  15056389 acaaaacaagatgcaagagttctactaatgtttgtgcct-agataagtatattattgatttttgccatagctaaaaccaactataac 15056474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 516 - 614
Target Start/End: Complemental strand, 15010167 - 15010073
Alignment:
Q  516 gagtatggctttcccttctttccttgaccaagcaattatagagactttttcatgcagagacaaaagaaaaaatgatttgtgttgacagtagtaacatta 614  Q
    |||||||| ||||| |||| ||||||||||||||||||| |||| |||||  ||||||||||  | ||||||| |||||  ||||||||||||||||||    
T  15010167 gagtatgg-tttccattctctccttgaccaagcaattattgagatttttt--tgcagagacagta-aaaaaattatttgcattgacagtagtaacatta 15010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 14290689 - 14290660
Alignment:
Q  1 tcaagattgataatcaactccagttagaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  14290689 tcaagattgataatcaactccagttagaaa 14290660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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