View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15217_high_10 (Length: 516)

Name: NF15217_high_10
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15217_high_10
NF15217_high_10
[»] chr2 (2 HSPs)
chr2 (10-516)||(8235277-8235783)
chr2 (10-61)||(8447645-8447696)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Complemental strand, 8235783 - 8235277
Alignment:
Q  10 aagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagaggaaagaaggaatgatacaccaacacaaaatcaaatag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8235783 aagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagaggaaagaaggaatgatacacaaacacaaaatcaaatag 8235684  T
Q  110 tgtcagtgtctcgccctttgtttcacactgcaaatgcttctgccttttcatcctacatgagtagagttcaagtccaagaaatctcccaccaacaacnnnn 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  8235683 tgtcagtgtctcgccctttgtttcacactgcaaatgcttctgccttttcatcctacatgagtagagttcaagtccaagaaatctcccaccaacaacaaaa 8235584  T
Q  210 nnnncaagaattgcagaaaaaacttggcaccctctgggcaaaacaaaatgaagaagttgagaaggttgctgatttcaaaaataatggcttgccattagca 309  Q
        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8235583 acaacaagaattgcagaaaaaacttggcaccttctgggcaaaacaaaatgaagaagttgagaaggttgttgatttcagaaataatggcttgccattagca 8235484  T
Q  310 aggattaagaagataatgagatcagaagaaggagtgagtatgatatcagctgaggcacctatcctgtttgctaaggcatgtgaaatgtttattatggagc 409  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8235483 aggattaagaagataatgaaagcagaagaaggagtgagtatgatatcagctgaggcacctattctgtttgctaaggcatgtgaaatgtttattatggagc 8235384  T
Q  410 ttgcaacaagatcatgggctaatgcagaggtgaacaaaagaaagacacttcaaaagagtgatattgcatctgctgtctcaagtaatgaagtgtttgattt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8235383 ttgcaacaagatcatgggctaatgcagaggtgaacaaaagaaagacacttcaaaagagtgatattgcatctgctgtctcaagtaatgaagtgtttgattt 8235284  T
Q  510 cttagtt 516  Q
    |||||||    
T  8235283 cttagtt 8235277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 8447696 - 8447645
Alignment:
Q  10 aagaatatatattttgtagtcca-aacaacaaatatggatcaaaagacacaag 61  Q
    ||||||||||||||||||||||| || ||| || |||||||||||||||||||    
T  8447696 aagaatatatattttgtagtccataataac-aacatggatcaaaagacacaag 8447645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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