View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_14 (Length: 501)
Name: NF15217_high_14
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Complemental strand, 42470361 - 42469890
Alignment:
| Q |
8 |
gagcacagatagtggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcacaagataaagaattaaacaaccatccaacaata |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42470361 |
gagcacagatagtggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcaca---taaagaattaaacaaccatccaacaata |
42470265 |
T |
|
| Q |
108 |
gtgtagtaggaaacaattgtaatgcnnnnnnnnnnnnnnnnnggtcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaaga |
207 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470264 |
atgtagtaggaaacaattgtaatgcaaaaaattaataaaaaagatcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaagc |
42470165 |
T |
|
| Q |
208 |
agagaaaactaaacatgttagatagctgcaaattaaatagcacttgtaatgataataacttcaatagatttctgtcatgccaacatgtgcc-ttaaggaa |
306 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42470164 |
aaagaaaacaaaacatgttagatagctgcaaattaaatagcactagtaatgataataacttcaatagatttctgtcatgccaacatgtgcctttaaggaa |
42470065 |
T |
|
| Q |
307 |
ggcgttaagttatctaccaatagaaatcgtgtgatgg--nnnnnnnnnctttttaactttgaatgtatgaatttcataaaaatttctataactagtccat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470064 |
ggcgttaagttatctaccaatagaaatcgtgtgatggaaaaaaaaaaaaaatttaactttgaatgtatgaatttcataaaaatttctataactagtccat |
42469965 |
T |
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| Q |
405 |
taacttgtgttttaaggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttct |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42469964 |
taacttgtgttttaaggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttct |
42469890 |
T |
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