View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_16 (Length: 436)
Name: NF15217_high_16
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 7619014 - 7618602
Alignment:
| Q |
1 |
aagaaaagtcggttgaatctaaccatggcaggcaaaggcttgtttttgtattctctacttttttgtctccatggattgtttcaattctttgtacataatt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7619014 |
aagaaaagttggttgaatctaaccatggcaggcaaaggtttgtttttgtattctctacttttttgtctccatggattgtttcaattcttcgtacat---- |
7618919 |
T |
|
| Q |
101 |
aacatgttctttgatgggtaggaaaagcttcaaaaaacacaaaatttgtagacattgttggtggaaagactgacttccagatccaagttagggtgattaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
7618918 |
-----gttctttgatgggtaggaaaagcttcaaaaaacacaaaatttgcagacattgttggtggaaagattgacttccagatccaaattagggtgattaa |
7618824 |
T |
|
| Q |
201 |
tctttggattactcctgaccgtttcaatcctaatgaagttggccgtatgcatatgatcttgcttgatgatcaggtaatgtcttgactctaatctactgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7618823 |
tctttggattactcctgaccgtttcaatcctaatgaagttggtcgtatgcatatgatcttgcttgatgatcaggtaatgtcttgactctaatctactgta |
7618724 |
T |
|
| Q |
301 |
acacacatgtgaaaattatgtttgcttgaactaattattcctttgagtatgtaaagccaaacacaaaaaatgagtcgtaatatattaaaacttagaaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7618723 |
acacacatgtgaaaattatgtttgcttgaactaattcttcctttgagtatgtaaagccaaacacaaaaaatgagtcgtaatatattaaaacttagaaggt |
7618624 |
T |
|
| Q |
401 |
aaattgtcagggtagaaacttt |
422 |
Q |
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||| |||||||||||||||||| |
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| T |
7618623 |
aaaatgtcagggtagaaacttt |
7618602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 18731920 - 18732042
Alignment:
| Q |
156 |
tgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaatcctaatgaagttggccgtatgcatatg |
255 |
Q |
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||||||| |||||| |||||| || ||||| | | ||||||||||| |||| |||||| |||| ||||||||| |||||||||||| ||||||||||| |
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| T |
18731920 |
tgttggtagaaagattgactttcaaatccagagtcgtgtgattaatctctggactactccggaccatttcaatccaaatgaagttggcagtatgcatatg |
18732019 |
T |
|
| Q |
256 |
atcttgcttgatgatcaggtaat |
278 |
Q |
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||||||||||||||||||||||| |
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| T |
18732020 |
atcttgcttgatgatcaggtaat |
18732042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 29128751 - 29128644
Alignment:
| Q |
120 |
aggaaaagcttcaaaaaacacaaaatttgtagacattgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgac |
219 |
Q |
| |
|
|||||||||| |||| ||| || |||| ||||||||||||||||| | ||| ||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
29128751 |
aggaaaagctccaaagctcactaagtttgcagacattgttggtggaagaattgagttccagatccagggtagggtgattaatctttggaccactcctgac |
29128652 |
T |
|
| Q |
220 |
cgtttcaa |
227 |
Q |
| |
|
|||||||| |
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|
| T |
29128651 |
cgtttcaa |
29128644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 16504276 - 16504187
Alignment:
| Q |
21 |
aaccatggcaggcaaaggcttgtttttgtattctctactttttt--gtctccatggattgtttcaattctttgtacataattaacatgtt |
108 |
Q |
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|||||||||| ||||||| |||||||||| ||||||| | |||| || | |||| |||||||||| ||||||||||||||||| ||||| |
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| T |
16504276 |
aaccatggcaagcaaaggtttgtttttgtcttctctaatattttctgttttcatgtattgtttcaaatctttgtacataattaatatgtt |
16504187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 21677141 - 21677027
Alignment:
| Q |
143 |
aatttgtagacattgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaatcctaatgaagttgg |
242 |
Q |
| |
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|||||| ||||||||||||||||| | ||| || |||||||| | ||||||||| |||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
21677141 |
aatttgcagacattgttggtggaagaattgattttcagatccagggtagggtgatcaatctttggactactccagaccgtttcaacgcagctgaagttgg |
21677042 |
T |
|
| Q |
243 |
ccgtatgcatatgat |
257 |
Q |
| |
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||||||||||||| |
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| T |
21677041 |
aagtatgcatatgat |
21677027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 18850745 - 18850672
Alignment:
| Q |
154 |
attgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaa |
227 |
Q |
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|||||||||||||| | ||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||||| |
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| T |
18850745 |
attgttggtggaaaaattgagttccagatccaaggtagagtgcttaacctgtggactactcctgaccgtttcaa |
18850672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 2740236 - 2740163
Alignment:
| Q |
154 |
attgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaa |
227 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||||| |
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| T |
2740236 |
attgttggtggaaaaattgagttccagatccaaggtagagtgcttaacctgtggactactcctgaccgtttcaa |
2740163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 28786510 - 28786436
Alignment:
| Q |
154 |
attgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaat |
228 |
Q |
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|||||||||||||| | ||| ||||||||||||| || ||| |||| || |||| ||||||||||||||||||| |
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| T |
28786510 |
attgttggtggaaaaattgagttccagatccaaggtaaagtgcttaacctgtggactactcctgaccgtttcaat |
28786436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 21796782 - 21796709
Alignment:
| Q |
154 |
attgttggtggaaagactgacttccagatccaagttagggtgattaatctttggattactcctgaccgtttcaa |
227 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||||| |
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| T |
21796782 |
attgttggtggaaaaattgagttccagatccaaggtagagtgcttaacctgtggactactcctgaccgtttcaa |
21796709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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