View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_18 (Length: 421)
Name: NF15217_high_18
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 43015407 - 43014997
Alignment:
| Q |
1 |
ttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccggttgttgttgttgcactaattattctttgattattatcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015407 |
ttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccagttgttgttgttgcactaattattctttgattattatcaga |
43015308 |
T |
|
| Q |
101 |
ccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015307 |
ccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatc |
43015208 |
T |
|
| Q |
201 |
acccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015207 |
acccaattcgtcttctcgggttttcgattctttccgaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtc |
43015108 |
T |
|
| Q |
301 |
tggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015107 |
tggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgt |
43015008 |
T |
|
| Q |
401 |
atatgcctttg |
411 |
Q |
| |
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||||||||||| |
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| T |
43015007 |
atatgcctttg |
43014997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 331
Target Start/End: Original strand, 28948724 - 28948919
Alignment:
| Q |
136 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
235 |
Q |
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||||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || || | | |||| |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcc |
28948823 |
T |
|
| Q |
236 |
aaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttc |
331 |
Q |
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| T |
28948824 |
atagttggtgtagaggactagtatcttcttgaaacctttcataacaccatcaataataactggtctagttttccctgttttgtgccatcttgtttc |
28948919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 4235893 - 4235754
Alignment:
| Q |
111 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
210 |
Q |
| |
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||||| ||||||||||| || || ||||||||| |||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
4235893 |
tgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
4235794 |
T |
|
| Q |
211 |
tcttctcgggttttcgattctttccaa-agttggtgtagag |
250 |
Q |
| |
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||||||| ||||||| | ||||| ||| ||||||||||||| |
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| T |
4235793 |
tcttctctggttttcca-tctttgcaatagttggtgtagag |
4235754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 38887137 - 38887028
Alignment:
| Q |
156 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaa |
255 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| |||| ||||| || |||| |
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| T |
38887137 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
38887038 |
T |
|
| Q |
256 |
gaattttctt |
265 |
Q |
| |
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|||||||||| |
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| T |
38887037 |
gaattttctt |
38887028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 275
Target Start/End: Complemental strand, 30505981 - 30505860
Alignment:
| Q |
154 |
ctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaac |
253 |
Q |
| |
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||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| || |||| | |||||| |||| ||||| || || |
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| T |
30505981 |
ctccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtac |
30505882 |
T |
|
| Q |
254 |
aagaattttcttgcaacctttt |
275 |
Q |
| |
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||||||||| ||| |||||||| |
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| T |
30505881 |
aagaatttttttgtaacctttt |
30505860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 34829853 - 34830007
Alignment:
| Q |
120 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgg |
219 |
Q |
| |
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||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
34829853 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcag |
34829952 |
T |
|
| Q |
220 |
gttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaaccttt |
274 |
Q |
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| || | | ||||| ||||||||||||| || || || |||||| ||||||| |
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| T |
34829953 |
gcttcttttgccttccatagttggtgtagaggactagtatcttcttgaaaccttt |
34830007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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