View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15217_high_2 (Length: 707)
Name: NF15217_high_2
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 17 - 690
Target Start/End: Original strand, 7368077 - 7368752
Alignment:
| Q |
17 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
7368077 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggttgctcgttaagaataacaa |
7368176 |
T |
|
| Q |
117 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttatcatataagttcgatatctcattgatgatgtgtattttttaata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7368177 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttgtcatataagttcgatatctcattgatgatgtgtattttttaata |
7368276 |
T |
|
| Q |
217 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgtacatttcgtttctcttattccaggttacttccattagtaaannnnnnn |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7368277 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgcacatttcgtttctcttattccaggttacttccattagtaaattttttg |
7368376 |
T |
|
| Q |
317 |
nnnnnnnnnngctgtgttccttcttttaccaattcaaaattggcacaatagacttggtagtcttatcatctagagattaatgaactgatttgaaatatta |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7368377 |
tttatttttt-ctgtgttccttcttttaccaattcaaaattggcacaatagacttggtagtcttatcatctagagattaatgaactgattcgaaatatta |
7368475 |
T |
|
| Q |
417 |
tttaccataaatattatggcgtagtttgatccacat----gatcccacttaatgagataagactttattgttgttgttgtagacttggccgttctcatat |
512 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7368476 |
tttaccataaatattatgacgtagtttgattcacatagttgatcccacctaatgagataagactttattgttgttgttgtagacttggcctttctcatat |
7368575 |
T |
|
| Q |
513 |
aaatgttattaaattagtaatgcagccgttataaaatacaatatgtttcatcaataaaaatttgcccgttttgtgtaatttttgttgcctaggtaaaccc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7368576 |
aaatgttattaaattagtaatgcagccgttataaaatacagtatgtttcatcaa-aaaaatttgcccgttttgtgtaatgtttgttgcctaggtaaaccc |
7368674 |
T |
|
| Q |
613 |
attctaatccttttgaagttattcatgctgatttatggggtccttcacccctgccctcttcaagtttctacaactatt |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7368675 |
attctaatccttttgaagttattcatgctgatttatggggtccttcacccctgccctcttcaagtttctaaaactatt |
7368752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 7377088 - 7377196
Alignment:
| Q |
28 |
gtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaaaccaactaaac |
127 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||| ||| ||| || ||| |||||||||||||||| |||||||| |
|
|
| T |
7377088 |
gtttcttcctattttctctgtttttaat-tattagagtataggatcagtctcaataaattaattacagttagtttgttaagaataacaaactaactaaac |
7377186 |
T |
|
| Q |
128 |
taacaatttt |
137 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7377187 |
tagcaatttt |
7377196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 37430484 - 37430417
Alignment:
| Q |
429 |
attatggcgtagtttgatccacat----gatcccacttaatgagataagactttattgttgttgttgt |
492 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
37430484 |
attatggcgtagtttgatccatatagccgatcccacttagtgagataaggcttggttgttgttgttgt |
37430417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 26490530 - 26490596
Alignment:
| Q |
426 |
aatattatggcgtagtttgatccacat----gatcccacttaatgagataagactttattgttgttg |
488 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
26490530 |
aatattatggcgtaatttgatccatatagtcgatcccacttagtaagataagacttgattgttgttg |
26490596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University