View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_20 (Length: 412)
Name: NF15217_high_20
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 40309642 - 40310038
Alignment:
| Q |
1 |
aatcttgttaaactggtatgaacctaattcgttgttaactaaaggtctctcaaatatcatatctctttgattacatattgcagaagagacaaattcatta |
100 |
Q |
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| T |
40309642 |
aatcttgttaaaatggtatgaacctaattcgttgttaactaaaggtctctcgaatatcatatctctttgattacaaattgcagaagagacaaattcatta |
40309741 |
T |
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| Q |
101 |
ctattgcttcgtttgtgaaaatgaaactcatcattagacttcttgacatggtcaaactccaatgtctattgattcctaggatgacagttcacacatggag |
200 |
Q |
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| T |
40309742 |
ctattgcttcgtttgtgaaaatgaaactcatcattagacttcttgacatggtcagactccaatgtatattgattactaggatgacagttcacacatggag |
40309841 |
T |
|
| Q |
201 |
acccttgaggaaggttgttataataagcaatcggattaacaaaattggtattgtctacatacaaagagttgtcacctggaactttttccgcgacaaaggg |
300 |
Q |
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| T |
40309842 |
acccttgaggaagtttgttataataagcaatcggattaacaaaattggtattgtctacatacaaagagttgtcacctggaactttttctgcgacaaaggg |
40309941 |
T |
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| Q |
301 |
aataatgttttcattagcaacattatatggttgatccttaaataactgaactttagatatttttagatctttaggcagtacacggatgggagatgga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40309942 |
aataatgttttcattagcaacattatatggttgatccttaaataactgaactttagatatttttagatctttaggcagtacgcggatgggagatgga |
40310038 |
T |
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