View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_21 (Length: 411)
Name: NF15217_high_21
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 34647222 - 34646827
Alignment:
| Q |
18 |
ttgatctttcataatattgcgattgaaggtgtcttccttaatgcgattgaaggagcccttgttgaacttctctagatgtttcttccactccatgcttatt |
117 |
Q |
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| T |
34647222 |
ttgatctttcataatattgcgattgaaggtgtcttccttaatgcgattgaaggagcccttgttgaacttctctagatgtttcttccactccatgcttatt |
34647123 |
T |
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| Q |
118 |
gtggtgtattttccaacacacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattctttattgggttcttac |
217 |
Q |
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| T |
34647122 |
gtggtgtattttccaacacacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattctttattgggttcttac |
34647023 |
T |
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| Q |
218 |
ttttgatcttactttgaattatttattttttctttccacggcgtcattttattaaaggaaccttagaattgtaattaatggacatttgattccc--ttat |
315 |
Q |
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| T |
34647022 |
ttttgatcttactttgaattatttattttttctttccacggcatcattttattaaaggaaccttagaattgtaattaatggacatttgattcccttttat |
34646923 |
T |
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| Q |
316 |
tcacataactcttagaactcattagaagtgaacttacctactcgattcgttcacgtagcttttatccatcgaccattttctttctccacataagct |
411 |
Q |
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| T |
34646922 |
tcacataactcttagaactcattagaagtgaacttacctactcgattcgttcacgtagcttttatccatcgaccattttctttctccacaaaagct |
34646827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 32973519 - 32973451
Alignment:
| Q |
136 |
cacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattcttt |
204 |
Q |
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| T |
32973519 |
cacacttcttgttggagatctattagatagatagactgcacatgtcacaacttcaacccaaaattcttt |
32973451 |
T |
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