View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15217_high_22 (Length: 407)
Name: NF15217_high_22
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 30406003 - 30405627
Alignment:
| Q |
13 |
aaaatcacgatgtattgaaataacagagtgacaaataaatgttggaatggaagaaataaacttttgttacgaacattaaagcatacgaagccaaagttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30406003 |
aaaatcacgatgtattgaaataacagagtgacaaataaatgttggaatggaagaaataaacttttgttacgaacattaaagcatacgaagccaaagttat |
30405904 |
T |
|
| Q |
113 |
aaatgtatttattcaaaaattaaaataatttcaatttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30405903 |
aaatgtatttattcaaaaattaaaataatttcaatttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattg |
30405804 |
T |
|
| Q |
213 |
aaattgtatcatgttctgaaccattgtatcattagaatcctaaagtttttctaatgatctcaccacatcatcaatgtttggtcgatttttcgaactaaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30405803 |
aaattgtatcatgttctgaaccattgtatcattagaatcctaaagtttttctaatgatctcaccacatcatcaatgtttggtcgatttttcgaattacaa |
30405704 |
T |
|
| Q |
313 |
gacagacattgaattgcaatacgaggcacctccattgcttcatgcggcgagtattggccttctatatgggaatccat |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
30405703 |
gacagacattgaattgcaatacgagccacctccattgcttcatgcggcgagtattgaccttctatacaggaatccat |
30405627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 148 - 389
Target Start/End: Complemental strand, 30402782 - 30402541
Alignment:
| Q |
148 |
ttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaaccattgtatcattag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30402782 |
ttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaaccattgtatcattag |
30402683 |
T |
|
| Q |
248 |
aatcctaaagtttttctaatgatctcaccacatcatcaatgtttggtcgatttttcgaactaaaagacagacattgaattgcaatacgaggcacctccat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30402682 |
aatcctaaagtttttctaatgatctcaccacatcatcaatatttggtcgatttttcgaactaaaagacagacattgaattgcaatacgagccacctccat |
30402583 |
T |
|
| Q |
348 |
tgcttcatgcggcgagtattggccttctatatgggaatccat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30402582 |
tgcttcatgcggcgagtattggccttctatatgggaatccat |
30402541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University